RetrogeneDB ID: | retro_btau_1006 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 23:21839484..21839805(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000046237 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.69099 | ||
Ensembl ID: | ENSBTAG00000004402 | ||
Aliases: | SLMO2, C20ORF45 | ||
Description: | protein slowmo homolog 2 [Source:RefSeq peptide;Acc:NP_001030553] |
Percent Identity: | 97.2 % |
Parental protein coverage: | 55.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSIIG |
MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSII. | |
Retrocopy | MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSIID |
Parental | AARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVD |
.ARTKTY.QEHSVVDPVEKTMELKSTNISFTNMVSVD | |
Retrocopy | VARTKTYEQEHSVVDPVEKTMELKSTNISFTNMVSVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .79 RPM | 26 .46 RPM |
ERP005899_muscle | 2 .48 RPM | 56 .48 RPM |
SRP017611_brain | 0 .78 RPM | 16 .63 RPM |
SRP017611_kidney | 1 .96 RPM | 34 .32 RPM |
SRP017611_liver | 1 .21 RPM | 21 .22 RPM |
SRP030211_testis | 5 .25 RPM | 53 .01 RPM |