RetrogeneDB ID: | retro_ptro_2160 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 5:72172991..72173370(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSPTRG00000013682 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.71 % |
Parental protein coverage: | 65.46 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTV-LTQEAIITV-KG |
SL.........V.E.SVV.P.EKTMELKSTNISFTNMV.VDER...........K.V.LTQEA.....K. | |
Retrocopy | SLLLVQQEPKHVLEYSVVNPIEKTMELKSTNISFTNMVLVDERYTQTTSSGHRKKLV<LTQEAVSSE<KE |
Parental | VSLSSYLEGLMASTISSNASKGREAMEWVIHKLNAEIEELTASARGTIRTPMAAAAFAE |
......L....A.T.SSNA.KG.EA.EWVIHKL...IEELTAS.RG.....M.AA.F.. | |
Retrocopy | AASADTLKKPVARTVSSNANKG*EALEWVIHKLHVNIEELTASKRGSL*ILMVAAEFVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .05 RPM | 13 .30 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .92 RPM |
SRP007412_heart | 0 .00 RPM | 21 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .73 RPM |
SRP007412_liver | 0 .00 RPM | 21 .93 RPM |
SRP007412_testis | 0 .00 RPM | 62 .39 RPM |