RetrogeneDB ID: | retro_btau_996 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 22:48301803..48302222(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.69099 | ||
Ensembl ID: | ENSBTAG00000004402 | ||
Aliases: | SLMO2, C20ORF45 | ||
Description: | protein slowmo homolog 2 [Source:RefSeq peptide;Acc:NP_001030553] |
Percent Identity: | 83.69 % |
Parental protein coverage: | 72.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTMELKST |
NP.N..VVGVDVLDRH.DPSGK..S.RLLSTEWGLPSIVKSIIGAARTKT.VQE.SVVDPVEKTME.KST | |
Retrocopy | NPLNLRVVGVDVLDRHTDPSGKSPSRRLLSTEWGLPSIVKSIIGAARTKTSVQEYSVVDPVEKTMEFKST |
Parental | NISFTNMVSVDERLIYNPHLQDPE-KTILTQEAIITVKGVSLGSYLEGLMASTISSNANKGREAMEWVIH |
NIS.TNMVS.D.RL.Y.PH.QD.E.KTILT.EAIITVKGVSL..YLEGLMAS.ISSNANKG.EAMEWVIH | |
Retrocopy | NISLTNMVSIDGRLTYKPHPQDSE<KTILTHEAIITVKGVSLSHYLEGLMASMISSNANKGQEAMEWVIH |
Parental | K |
K | |
Retrocopy | K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 26 .46 RPM |
ERP005899_muscle | 0 .05 RPM | 56 .48 RPM |
SRP017611_brain | 0 .00 RPM | 16 .63 RPM |
SRP017611_kidney | 0 .36 RPM | 34 .32 RPM |
SRP017611_liver | 0 .08 RPM | 21 .22 RPM |
SRP030211_testis | 0 .15 RPM | 53 .01 RPM |