RetrogeneDB ID: | retro_sscr_959 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 8:7721845..7722427(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000008734 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSSSCG00000007525 | ||
Aliases: | SLMO2, C17H20orf45 | ||
Description: | Sus scrofa slowmo homolog 2 (Drosophila) (SLMO2), mRNA. [Source:RefSeq mRNA;Acc:NM_001113697] |
Percent Identity: | 99.48 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDASGKLHSHRLLSTEWGLPSIVKSIIG |
MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDASGKLHSHRLLSTEWGLPSIVKSIIG | |
Retrocopy | MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDASGKLHSHRLLSTEWGLPSIVKSIIG |
Parental | AARTKTYVQEHSVVDPVAKTMELKSTNISFTNMVSVDERLIYKPHPQDSEKTVLTQEAIITVKGVSLGSY |
AARTKTYVQEHSVVDPVAKTMELKSTNISFTNMVSVDERLIYKPHPQD.EKTVLTQEAIITVKGVSLGSY | |
Retrocopy | AARTKTYVQEHSVVDPVAKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIITVKGVSLGSY |
Parental | LEGLMASTISSNANKGREAMEWVIHKLNAEIEELTASARGSIRTPMAAAAFVEK |
LEGLMASTISSNANKGREAMEWVIHKLNAEIEELTASARGSIRTPMAAAAFVEK | |
Retrocopy | LEGLMASTISSNANKGREAMEWVIHKLNAEIEELTASARGSIRTPMAAAAFVEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 1 .59 RPM | 12 .48 RPM |
SRP014902_testis | 1 .84 RPM | 9 .05 RPM |
SRP018288_heart | 3 .01 RPM | 13 .07 RPM |
SRP018288_kidney | 3 .45 RPM | 24 .04 RPM |
SRP018288_liver | 0 .96 RPM | 9 .75 RPM |
SRP018288_lung | 3 .67 RPM | 17 .11 RPM |
SRP018856_adipose | 0 .77 RPM | 6 .39 RPM |
SRP035408_brain | 1 .14 RPM | 2 .73 RPM |
SRP035408_liver | 2 .05 RPM | 5 .52 RPM |