RetrogeneDB ID: | retro_pabe_2631 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:44104049..44104424(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSPPYG00000011182 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 70.08 % |
Parental protein coverage: | 72.25 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFT-NMVSVDERLIYKPHPQDPEKTVLTQEAIITVKG |
KSLIG.ARTKTYV.E.SVV.P.EKTMELKSTNIS...NMVSV.ERL.YKPHPQDP.............KG | |
Retrocopy | KSLIGTARTKTYVLEYSVVNPIEKTMELKSTNISLK<NMVSVGERLTYKPHPQDPXXXLF*LNKP*SLKG |
Parental | VSLSSYLEGLMASTISSNASKGREAMEWVIHKLNA-EIEELTASARGTIRTPMAAAA |
.SLSSYLEGLMAS.ISSNA.KG.EA.EWVIHKL.....EEL.AS.RG.IRTP..AAA | |
Retrocopy | GSLSSYLEGLMASRISSNANKGQEALEWVIHKLHV>KNEELMASTRGGIRTPVVAAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .24 RPM |
SRP007412_heart | 0 .00 RPM | 5 .51 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .37 RPM |
SRP007412_liver | 0 .00 RPM | 5 .20 RPM |