RetrogeneDB ID: | retro_eeur_406 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_286624:4734..5033(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSEEUG00000003697 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 90.1 % |
Parental protein coverage: | 64.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | STEWGLPSIVKSIIGAARTKTYVQEHSVVDPVEKTM-ELKSTNISFTNMVSVDERLTYKPYPQDPEKTVL |
S.EW.LPSIVKSIIGA.RTKTYVQ.HSVVDPVEKTM.ELKSTNI.FTNMVSVDERLTYKP.PQDP.KTVL | |
Retrocopy | SAEWELPSIVKSIIGAVRTKTYVQGHSVVDPVEKTM<ELKSTNILFTNMVSVDERLTYKPHPQDPGKTVL |
Parental | TQEAIITVKGVSLSSYLEGLMASTISSNANK |
TQEAIITVKGVS.SSYLEGLMAS.ISSNANK | |
Retrocopy | TQEAIITVKGVSFSSYLEGLMASMISSNANK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .16 RPM | 4 .35 RPM |
SRP017611_kidney | 2 .06 RPM | 16 .13 RPM |
SRP017611_liver | 0 .64 RPM | 11 .09 RPM |