RetrogeneDB ID: | retro_hsap_4227 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 9:6734719..6735076(-) | ||
Located in intron of: | ENSG00000107077 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000231108 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSG00000101166 | ||
Aliases: | SLMO2, C20orf45, PRELID3B, dJ543J19.5 | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 80.17 % |
Parental protein coverage: | 62.37 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MKIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSLIG |
MKI.T.EH.FDHP.ET.T.AAMQ.YPNP.N.SVVGVDVLDRHIDPS.KLHSHR.LST.WGLPSIVKSLIG | |
Retrocopy | MKI*TLEHLFDHP*ETLTIAAMQ*YPNPINLSVVGVDVLDRHIDPSEKLHSHR-LSTDWGLPSIVKSLIG |
Parental | AARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEK |
.AR.KT.V.EHSVVDPVEKTME..STNISFTN...V.ERLIYK.HPQD.EK | |
Retrocopy | -ARNKTFV*EHSVVDPVEKTMEQESTNISFTNIF*VGERLIYKSHPQDTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 75 .34 RPM |
bodymap2_adrenal | 0 .00 RPM | 68 .72 RPM |
bodymap2_brain | 0 .09 RPM | 47 .09 RPM |
bodymap2_breast | 0 .00 RPM | 73 .15 RPM |
bodymap2_colon | 0 .00 RPM | 56 .89 RPM |
bodymap2_heart | 0 .00 RPM | 42 .35 RPM |
bodymap2_kidney | 0 .00 RPM | 86 .55 RPM |
bodymap2_liver | 0 .00 RPM | 37 .35 RPM |
bodymap2_lung | 0 .00 RPM | 61 .96 RPM |
bodymap2_lymph_node | 0 .00 RPM | 56 .26 RPM |
bodymap2_ovary | 0 .02 RPM | 70 .67 RPM |
bodymap2_prostate | 0 .00 RPM | 52 .01 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 41 .41 RPM |
bodymap2_testis | 0 .06 RPM | 59 .67 RPM |
bodymap2_thyroid | 0 .00 RPM | 82 .63 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 78 .06 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2830 |
Pongo abelii | retro_pabe_3411 |
Macaca mulatta | retro_mmul_1155 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .13 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .14 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .15 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .02 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .10 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .05 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .06 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .09 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .04 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .06 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .05 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |