RetrogeneDB ID: | retro_btau_1789 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:2214119..2214378(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSBTAG00000019147 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S20 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZBH8] |
Percent Identity: | 72.41 % |
Parental protein coverage: | 72.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGE-GSKT |
KTP.EP.V..HRIR..LTS.N.KSL.K..ADLIRG.K.KNLKVKGP..MPT.TLR.TTRK..CGE.GSKT | |
Retrocopy | KTPLEPKVETHRIRMILTSPNTKSL*KLYADLIRGMKKKNLKVKGPGGMPTETLRTTTRKSLCGE>GSKT |
Parental | WDRFQMRIHKRLIDLHS |
WD.FQMRIHK.L..LHS | |
Retrocopy | WDHFQMRIHK*LVVLHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 150 .18 RPM |
ERP005899_muscle | 0 .00 RPM | 974 .54 RPM |
SRP017611_brain | 0 .00 RPM | 45 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 166 .26 RPM |
SRP017611_liver | 0 .00 RPM | 145 .81 RPM |
SRP030211_testis | 0 .00 RPM | 105 .59 RPM |