RetrogeneDB ID: | retro_ocun_332 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 1:3177944..3178257(-) | ||
Located in intron of: | ENSOCUG00000025387 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSOCUG00000003068 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 (RPS20), mRNA [Source:RefSeq mRNA;Acc:NM_001253734] |
Percent Identity: | 80.37 % |
Parental protein coverage: | 88.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAFKDTGKTPVE-PEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTP |
MAFK.TGKTPVE..EVA.HRIRITLTS.N.KSL.KVCADLIRGAKEKNL.VKGPV.MPTKTLRITTRKTP | |
Retrocopy | MAFKGTGKTPVE<TEVATHRIRITLTSHNTKSLGKVCADLIRGAKEKNLEVKGPVQMPTKTLRITTRKTP |
Parental | -CGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSIS |
.CGEGS.TW.RFQMR.H...IDL.SPSEI.KQ..S.S | |
Retrocopy | <CGEGSTTWGRFQMRLHQPRIDLQSPSEIGKQVASVS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 90 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 175 .55 RPM |
SRP017611_liver | 0 .08 RPM | 83 .40 RPM |