RetrogeneDB ID: | retro_ocun_1585 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | GL018703:6755747..6756103(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023199 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSOCUG00000003068 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 (RPS20), mRNA [Source:RefSeq mRNA;Acc:NM_001253734] |
Percent Identity: | 86.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPC |
MAFKDT.K.PVEPEVAIHRIRITLTSRNVKSLEKVCADLIR.AKEKNLKVKGPV.MPTKTLRITTRKTPC | |
Retrocopy | MAFKDTRKMPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRRAKEKNLKVKGPVGMPTKTLRITTRKTPC |
Parental | GEGSKTWDRFQMRIHKRLI-DLHSPSEIVKQITSISIEPGVEVEVTIADA |
GEGSKTWDRFQ.R.HKRLI..L.SPSE.VK.IT.ISIEPG.E..VT.ADA | |
Retrocopy | GEGSKTWDRFQVRTHKRLI<CLLSPSETVKLITAISIEPGAEADVTTADA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 90 .56 RPM |
SRP017611_kidney | 0 .10 RPM | 175 .55 RPM |
SRP017611_liver | 0 .08 RPM | 83 .40 RPM |