Parental gene:

RPS20, ENSOCUG00000003068

Aliases:None
Description:ribosomal protein S20 (RPS20), mRNA [Source:RefSeq mRNA;Acc:NM_001253734]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:71607724..71609256(-)


>ENSOCUG00000003068
ATGGCTTTTAAAGACACCGGAAAGACACCCGTGGAACCAGAGGTGGCCATTCACCGAATTAGGATCACCCTGACCAGTCG
CAACGTCAAGTCCCTGGAGAAGGTGTGTGCTGACTTGATCAGAGGAGCAAAGGAGAAGAATCTGAAAGTGAAAGGACCTG
TTCGGATGCCTACCAAGACACTGCGAATCACTACAAGAAAAACCCCTTGTGGTGAAGGTTCTAAGACATGGGACCGCTTC
CAGATGCGAATCCATAAACGGCTCATTGACTTGCACAGCCCTTCTGAGATTGTGAAACAGATCACTTCCATCAGCATTGA
GCCGGGAGTGGAAGTTGAAGTCACCATTGCAGATGCCTAA

Library Parental gene expression (RPM)
SRP017611_liver 83 .40 RPM
SRP017611_kidney 175 .55 RPM
SRP017611_brain 90 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019147 ortholog_one2one 11 retrogenes
Canis familiaris ENSCAFG00000029884 ortholog_one2one 20 retrogenes
Callithrix jacchus ENSCJAG00000016631 ortholog_one2one 4 retrogenes
Dipodomys ordii ENSDORG00000005794 ortholog_one2one 2 retrogenes
Echinops telfairi ENSETEG00000003394 possible_ortholog 3 retrogenes
Felis catus ENSFCAG00000029233 ortholog_one2one 22 retrogenes
Homo sapiens ENSG00000008988 ortholog_one2one 26 retrogenes
Gorilla gorilla ENSGGOG00000001837 ortholog_one2one 21 retrogenes
Macropus eugenii ENSMEUG00000014171 ortholog_one2one 21 retrogenes
Monodelphis domestica ENSMODG00000009114 ortholog_one2one 6 retrogenes
Mustela putorius furo ENSMPUG00000010452 possible_ortholog 15 retrogenes
Mus musculus ENSMUSG00000028234 ortholog_one2one 7 retrogenes
Nomascus leucogenys ENSNLEG00000001214 possible_ortholog 19 retrogenes
Otolemur garnettii ENSOGAG00000007760 ortholog_one2one 10 retrogenes
Procavia capensis ENSPCAG00000004300 ortholog_one2one 3 retrogenes
Pongo abelii ENSPPYG00000018600 ortholog_one2one 30 retrogenes
Pan troglodytes ENSPTRG00000020264 ortholog_one2one 27 retrogenes
Rattus norvegicus ENSRNOG00000008555 possible_ortholog 7 retrogenes
Sarcophilus harrisii ENSSHAG00000011200 ortholog_one2one 10 retrogenes
Sus scrofa ENSSSCG00000006249 ortholog_one2one 12 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_286 100.00 100.00
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2. retro_ocun_299 70.83 58.82
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3. retro_ocun_332 80.37 88.24
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4. retro_ocun_682 100.00 82.35
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5. retro_ocun_707 100.00 100.00
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6. retro_ocun_783 64.71 84.87
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7. retro_ocun_827 100.00 100.00
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8. retro_ocun_948 70.83 100.00
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9. retro_ocun_1006 100.00 100.00
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10. retro_ocun_1076 65.14 87.39
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11. retro_ocun_1218 63.11 100.00
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12. retro_ocun_1438 57.32 68.91
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13. retro_ocun_1467 78.57 69.75
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14. retro_ocun_1526 59.35 100.00
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15. retro_ocun_1585 86.67 100.00
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16. retro_ocun_1586 85.83 100.00
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17. retro_ocun_1609 88.89 59.66
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Download FASTA sequences of all ENSOCUG00000003068 retrocopies