RetrogeneDB ID: | retro_ptro_2897 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:71214763..71215100(-) | ||
Located in intron of: | ENSPTRG00000021022 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSPTRG00000020264 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 91.15 % |
Parental protein coverage: | 78.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTR-KTP |
MAFKDTGKTP.EP.VAIHRIRITLTS.NVKSL.KVCADLIRGAKEKNLKVK.PV.MPTKTLRITTR.KTP | |
Retrocopy | MAFKDTGKTPTEPKVAIHRIRITLTSCNVKSLAKVCADLIRGAKEKNLKVKRPVQMPTKTLRITTR>KTP |
Parental | CGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEL |
CGEGSK.WD.FQMRIHKRLIDLHSPSEIVKQITSISIEPGVE. | |
Retrocopy | CGEGSKPWDHFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 130 .86 RPM |
SRP007412_cerebellum | 0 .00 RPM | 99 .77 RPM |
SRP007412_heart | 0 .00 RPM | 177 .47 RPM |
SRP007412_kidney | 0 .00 RPM | 249 .02 RPM |
SRP007412_liver | 0 .00 RPM | 289 .27 RPM |
SRP007412_testis | 0 .00 RPM | 175 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4271 |
Gorilla gorilla | retro_ggor_2857 |
Pongo abelii | retro_pabe_3485 |