RetrogeneDB ID: | retro_fcat_967 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:65732325..65732679(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS20 | ||
Ensembl ID: | ENSFCAG00000029233 | ||
Aliases: | None | ||
Description: | ribosomal protein S20 [Source:HGNC Symbol;Acc:10405] |
Percent Identity: | 80.51 % |
Parental protein coverage: | 99.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPC |
MAFKD..KTPVEP.V.IH.IRITLTS.N.KSLEKVC.D.IRG.KEKNL.VKGPV..PT..L.ITT.KTPC | |
Retrocopy | MAFKDPRKTPVEPKVEIH*IRITLTSHNIKSLEKVCVDFIRGTKEKNLRVKGPVWTPTEILGITTSKTPC |
Parental | GEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD |
GEGSKTWD.F.MRIHK.LIDLHSPSEI.KQITSISIE.G.EVEVTIAD | |
Retrocopy | GEGSKTWDHF*MRIHK*LIDLHSPSEIGKQITSISIESGIEVEVTIAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .09 RPM |
SRP017611_kidney | 0 .00 RPM | 171 .18 RPM |
SRP017611_liver | 0 .00 RPM | 76 .53 RPM |