RetrogeneDB ID: | retro_cfam_1904 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 8:22947087..22947371(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSCAFG00000010045 | ||
Aliases: | None | ||
Description: | high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984] |
Percent Identity: | 69.31 % |
Parental protein coverage: | 99.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPKRKVSSAEGAAKEEPKRRSARLSAKPAPAKVETKPKKAAGKDK-SSDKKVQTKGKRGAKGKQAEVANQ |
MPKRKVSS.E..AKE.PKRR..R.SA...PAKVETKPKK..GK....SDK..Q..GKRGAKGKQA.VANQ | |
Retrocopy | MPKRKVSSEEVMAKEGPKRRLVRMSAESDPAKVETKPKKVGGKYS<YSDKCKQ-RGKRGAKGKQAKVANQ |
Parental | ETKEDLPAENGETKNEESPASDEAGEKEAKS |
......PAENGETKN.ESP.SD.A.EKEAKS | |
Retrocopy | RL---IPAENGETKN-ESPVSDKAEEKEAKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 79 .71 RPM |
SRP017611_brain | 0 .00 RPM | 21 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 65 .31 RPM |
SRP017611_liver | 0 .00 RPM | 20 .38 RPM |