RetrogeneDB ID: | retro_pabe_1172 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 14:55944459..55944718(-) | ||
Located in intron of: | ENSPPYG00000005839 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSPPYG00000011426 | ||
Aliases: | None | ||
Description: | high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984] |
Percent Identity: | 80. % |
Parental protein coverage: | 87. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPKRKVSSAEGAAKEEPKRRSARLSAKP-PAKVEAK-PKKAAAKDKSSDKKVQTKGKRGAKGKQAEVANQ |
MPKRKV.S.EGA..EEPKRRSARLSA.P.PAKVE.K...KAA.KDKSSDKKVQTKGKRGAKG...EVANQ | |
Retrocopy | MPKRKVGSTEGATEEEPKRRSARLSAEPAPAKVETK<AEKAAGKDKSSDKKVQTKGKRGAKGEKSEVANQ |
Parental | ETKEDLPAEN-GETKTEESP |
ET.EDLPAEN..ETKTE.SP | |
Retrocopy | ET-EDLPAEN<QETKTEDSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .77 RPM | 21 .67 RPM |
SRP007412_cerebellum | 0 .85 RPM | 44 .75 RPM |
SRP007412_heart | 0 .27 RPM | 14 .33 RPM |
SRP007412_kidney | 0 .46 RPM | 76 .60 RPM |
SRP007412_liver | 0 .49 RPM | 35 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1418 |
Pan troglodytes | retro_ptro_970 |