Parental gene:

HMGN1, ENSBTAG00000018768

Aliases:None
Description:Non-histone chromosomal protein HMG-14 [Source:UniProtKB/Swiss-Prot;Acc:P02316]
Organism:Cow (Bos taurus)
Coordinates:1:140906954..140913324(-)


>ENSBTAG00000018768
ATGCCCAAGAGGAAGGTCAGCTCCGCCGAGGGGGCGGCGAAGGAGGAGCCCAAGAGGAGGTCGGCGAGGTTGTCAGCTAA
ACCGGCTCCTGCAAAAGTGGAAACGAAGCCAAAAAAGGCGGCGGGAAAGGATAAATCTTCAGACAAAAAAGTGCAAACAA
AAGGGAAAAGAGGAGCAAAGGGAAAACAGGCGGAAGTGGCCAACCAGGAGACTAAAGAAGACTTACCTGCAGAAAATGGA
GAGACTAAAAACGAGGAGAGCCCAGCCTCTGATGAAGCAGAAGAGAAAGAAGCCAAGTCTGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 40 .38 RPM
SRP017611_kidney 103 .96 RPM
SRP017611_liver 47 .04 RPM
ERP005899_muscle 132 .66 RPM
ERP005899_liver 73 .54 RPM
SRP030211_testis 89 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014100 possible_ortholog 11 retrogenes
retro_amel_1103, retro_amel_1157, retro_amel_1307, retro_amel_1378, retro_amel_1580, retro_amel_1839, retro_amel_349, retro_amel_352, retro_amel_408, retro_amel_439, retro_amel_670,
Canis familiaris ENSCAFG00000010045 ortholog_one2many 12 retrogenes
retro_cfam_1056, retro_cfam_1233, retro_cfam_1318, retro_cfam_1392, retro_cfam_1522, retro_cfam_1667, retro_cfam_1904, retro_cfam_2202, retro_cfam_292, retro_cfam_404, retro_cfam_634, retro_cfam_649,
Cavia porcellus ENSCPOG00000002336 possible_ortholog 7 retrogenes
retro_cpor_1129, retro_cpor_1389, retro_cpor_334, retro_cpor_349, retro_cpor_4, retro_cpor_884, retro_cpor_949,
Equus caballus ENSECAG00000019029 possible_ortholog 5 retrogenes
retro_ecab_1130, retro_ecab_285, retro_ecab_362, retro_ecab_800, retro_ecab_848,
Homo sapiens ENSG00000205581 possible_ortholog 7 retrogenes
retro_hsap_1097, retro_hsap_1418, retro_hsap_1581, retro_hsap_1758, retro_hsap_1874, retro_hsap_3370, retro_hsap_762,
Monodelphis domestica ENSMODG00000020972 ortholog_many2many 5 retrogenes
retro_mdom_1085, retro_mdom_109, retro_mdom_284, retro_mdom_755, retro_mdom_88,
Otolemur garnettii ENSOGAG00000010329 possible_ortholog 35 retrogenes
retro_ogar_1062, retro_ogar_1186, retro_ogar_1245, retro_ogar_1304, retro_ogar_1355, retro_ogar_1437, retro_ogar_1527, retro_ogar_1529, retro_ogar_175, retro_ogar_1812, retro_ogar_1901, retro_ogar_1932, retro_ogar_2057, retro_ogar_2311, retro_ogar_2325, retro_ogar_2522, retro_ogar_2523, retro_ogar_266, retro_ogar_2712, retro_ogar_2729, retro_ogar_278, retro_ogar_2913, retro_ogar_2964, retro_ogar_3095, retro_ogar_3133, retro_ogar_3138, retro_ogar_3155, retro_ogar_333, retro_ogar_3354, retro_ogar_370, retro_ogar_393, retro_ogar_657, retro_ogar_699, retro_ogar_723, retro_ogar_958,
Pongo abelii ENSPPYG00000011426 possible_ortholog 25 retrogenes
retro_pabe_1066, retro_pabe_1149, retro_pabe_1172, retro_pabe_1190, retro_pabe_123, retro_pabe_1264, retro_pabe_1302, retro_pabe_1504, retro_pabe_1604, retro_pabe_1842, retro_pabe_2152, retro_pabe_2211, retro_pabe_2284, retro_pabe_2380, retro_pabe_251, retro_pabe_2518, retro_pabe_2771, retro_pabe_3086, retro_pabe_3648, retro_pabe_3825, retro_pabe_504, retro_pabe_698, retro_pabe_699, retro_pabe_702, retro_pabe_760,
Pan troglodytes ENSPTRG00000031426 possible_ortholog 22 retrogenes
retro_ptro_1256, retro_ptro_1299, retro_ptro_1301, retro_ptro_1454, retro_ptro_1556, retro_ptro_1740, retro_ptro_1821, retro_ptro_1830, retro_ptro_2058, retro_ptro_2290, retro_ptro_2559, retro_ptro_2716, retro_ptro_3119, retro_ptro_3278, retro_ptro_363, retro_ptro_463, retro_ptro_586, retro_ptro_61, retro_ptro_637, retro_ptro_696, retro_ptro_970, retro_ptro_980,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_388 72.86 68.32
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2. retro_btau_504 74.26 97.03
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3. retro_btau_572 65.96 93.07
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4. retro_btau_607 61.62 93.07
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5. retro_btau_617 63.27 95.05
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6. retro_btau_897 96.04 100.00
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7. retro_btau_928 72.94 82.18
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8. retro_btau_1178 95.05 100.00
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9. retro_btau_1475 71.74 90.10
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10. retro_btau_1560 64.08 100.00
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11. retro_btau_1746 66.67 92.08
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12. retro_btau_1801 50.52 95.05
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Download FASTA sequences of all ENSBTAG00000018768 retrocopies