RetrogeneDB ID:

retro_ogar_3133

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873725.1:621509..621812(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSOGAG00000001389
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000010329
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_3133
ATGCCAAAGAGTAAGGTCAGCTCTGCCGAAGGTGCAGGGAAGGAAGAGCCCAAGAGGAGGTCGGTGCGGTTGTCAGCTAA
ACCTGCTCCTGCGAAAGTGGAAACAAAGCCAAAAAAGGCAGCAGCAAGGGATAAATCTTCAGAGTAAAAAGTGCAACCAA
AAGGGAAAAGAGGAACAAAGGGAAAGCAGGCCGAAGTGGCCAACCAAGAAACTAAAGAAGATTTACCAGCAGAAAATGGA
GAAACTAAAACCGAGGAGAATCCAGCCACTGACGAAGCAGGAGAGAAAGAAGCCAAGTCTGAT

ORF - retro_ogar_3133 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.06 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMPKRKVSSAEGAGKEEPKRRSARLSAKPAPAKVETKPKKAAARDKSSDKKVQPKGKRGAKGKQAEVANQE
MPK.KVSSAEGAGKEEPKRRS.RLSAKPAPAKVETKPKKAAARDKSS..KVQPKGKRG.KGKQAEVANQE
RetrocopyMPKSKVSSAEGAGKEEPKRRSVRLSAKPAPAKVETKPKKAAARDKSSE*KVQPKGKRGTKGKQAEVANQE
ParentalTKEDLPAENGETKTEENPAADEAGEKEAKSD
TKEDLPAENGETKTEENPA.DEAGEKEAKSD
RetrocopyTKEDLPAENGETKTEENPATDEAGEKEAKSD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_3133 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 141 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001410011 retrocopies
Bos taurus ENSBTAG0000001876812 retrocopies
Canis familiaris ENSCAFG0000001004512 retrocopies
Cavia porcellus ENSCPOG000000023367 retrocopies
Equus caballus ENSECAG000000190295 retrocopies
Homo sapiens ENSG000002055817 retrocopies
Monodelphis domestica ENSMODG000000209725 retrocopies
Otolemur garnettii ENSOGAG00000010329 35 retrocopies
Pongo abelii ENSPPYG0000001142625 retrocopies
Pan troglodytes ENSPTRG0000003142622 retrocopies



Copyright © RetrogeneDB 2014-2017