RetrogeneDB ID: | retro_cfam_2202 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | X:103408573..103408847(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSCAFG00000010045 | ||
Aliases: | None | ||
Description: | high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984] |
Percent Identity: | 52.04 % |
Parental protein coverage: | 95.05 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | PKRKVSSAEGAAKEEPKRRS-ARLSAKPAPAKVETKPKKAAGKDKSSDKKVQTKGKRGAKGKQAEVANQE |
P..KV....GA.K.E..R...A.LS.KPAPAKVE..P.K.A...KSS.K..QTK.KRGAKGK.A.VAN.E | |
Retrocopy | PPKKVNAVKGAEKREHPRDL<AGLSVKPAPAKVEAEPPKPA---KSSSKTRQTKEKRGAKGK*AKVANHE |
Parental | TKEDLPAENGETK-NEESPASDEAGEKE |
.K...P....E.K.N...P...EA.EK. | |
Retrocopy | RKH-*PMQSREMK<NT*NPVPNEAREKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 79 .71 RPM |
SRP017611_brain | 0 .00 RPM | 21 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 65 .31 RPM |
SRP017611_liver | 0 .00 RPM | 20 .38 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_1801 |
Equus caballus | retro_ecab_1130 |