RetrogeneDB ID: | retro_btau_607 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 15:65798515..65798804(-) | ||
Located in intron of: | ENSBTAG00000020980 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSBTAG00000018768 | ||
Aliases: | None | ||
Description: | Non-histone chromosomal protein HMG-14 [Source:UniProtKB/Swiss-Prot;Acc:P02316] |
Percent Identity: | 61.62 % |
Parental protein coverage: | 93.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RKVSSAEGAA--KEEPKRRSARLSAKPAP-AKVETKPKKAAGKDKSSDKKVQTKGKR-GAKGKQAEVANQ |
RKVSS..G.....EEPK.R.ARLSAKPAP..KVE.KP.KAA.KDKSSDK.V.TKG.R.GAKGKQ..VANQ | |
Retrocopy | RKVSSEVGGGGENEEPKKRAARLSAKPAP<TKVEIKPQKAAEKDKSSDKNVPTKG*RGGAKGKQDKVANQ |
Parental | ETKED-LPAENGETKNEESPASDEAEEKE |
.TK.D..PAEN.E.......A..EA.... | |
Retrocopy | GTKDD<SPAENRESPASDEAAEREAKSDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 5 .84 RPM | 73 .54 RPM |
ERP005899_muscle | 0 .48 RPM | 132 .66 RPM |
SRP017611_brain | 0 .27 RPM | 40 .38 RPM |
SRP017611_kidney | 0 .89 RPM | 103 .96 RPM |
SRP017611_liver | 1 .13 RPM | 47 .04 RPM |
SRP030211_testis | 0 .12 RPM | 89 .62 RPM |