Parental gene:

HMGN1, ENSCAFG00000010045

Aliases:None
Description:high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984]
Organism:Dog (Canis familiaris)
Coordinates:31:34276222..34282233(-)


>ENSCAFG00000010045
ATGCCCAAGAGGAAGGTCAGCTCGGCCGAGGGCGCGGCCAAGGAGGAGCCCAAGAGGAGGTCGGCGAGGTTGTCCGCTAA
ACCTGCTCCCGCAAAAGTGGAAACGAAGCCAAAAAAGGCGGCGGGAAAGGATAAATCTTCAGACAAAAAAGTGCAAACAA
AGGGGAAAAGGGGAGCAAAGGGAAAACAGGCTGAAGTGGCTAACCAAGAAACGAAAGAAGACTTACCTGCAGAAAACGGA
GAAACCAAGAACGAGGAGAGTCCAGCCTCTGATGAAGCAGGAGAGAAAGAAGCCAAGTCTGATTAA

Library Parental gene expression (RPM)
SRP017611_brain 21 .04 RPM
SRP017611_kidney 65 .31 RPM
SRP017611_liver 20 .38 RPM
SRP012049_cerebellum 79 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000018768 ortholog_one2many 12 retrogenes
retro_btau_1178, retro_btau_1475, retro_btau_1560, retro_btau_1746, retro_btau_1801, retro_btau_388, retro_btau_504, retro_btau_572, retro_btau_607, retro_btau_617, retro_btau_897, retro_btau_928,
Cavia porcellus ENSCPOG00000002336 possible_ortholog 7 retrogenes
retro_cpor_1129, retro_cpor_1389, retro_cpor_334, retro_cpor_349, retro_cpor_4, retro_cpor_884, retro_cpor_949,
Monodelphis domestica ENSMODG00000020972 ortholog_one2many 5 retrogenes
retro_mdom_1085, retro_mdom_109, retro_mdom_284, retro_mdom_755, retro_mdom_88,
Otolemur garnettii ENSOGAG00000010329 possible_ortholog 35 retrogenes
retro_ogar_1062, retro_ogar_1186, retro_ogar_1245, retro_ogar_1304, retro_ogar_1355, retro_ogar_1437, retro_ogar_1527, retro_ogar_1529, retro_ogar_175, retro_ogar_1812, retro_ogar_1901, retro_ogar_1932, retro_ogar_2057, retro_ogar_2311, retro_ogar_2325, retro_ogar_2522, retro_ogar_2523, retro_ogar_266, retro_ogar_2712, retro_ogar_2729, retro_ogar_278, retro_ogar_2913, retro_ogar_2964, retro_ogar_3095, retro_ogar_3133, retro_ogar_3138, retro_ogar_3155, retro_ogar_333, retro_ogar_3354, retro_ogar_370, retro_ogar_393, retro_ogar_657, retro_ogar_699, retro_ogar_723, retro_ogar_958,
Pongo abelii ENSPPYG00000011426 possible_ortholog 25 retrogenes
retro_pabe_1066, retro_pabe_1149, retro_pabe_1172, retro_pabe_1190, retro_pabe_123, retro_pabe_1264, retro_pabe_1302, retro_pabe_1504, retro_pabe_1604, retro_pabe_1842, retro_pabe_2152, retro_pabe_2211, retro_pabe_2284, retro_pabe_2380, retro_pabe_251, retro_pabe_2518, retro_pabe_2771, retro_pabe_3086, retro_pabe_3648, retro_pabe_3825, retro_pabe_504, retro_pabe_698, retro_pabe_699, retro_pabe_702, retro_pabe_760,
Pan troglodytes ENSPTRG00000031426 possible_ortholog 22 retrogenes
retro_ptro_1256, retro_ptro_1299, retro_ptro_1301, retro_ptro_1454, retro_ptro_1556, retro_ptro_1740, retro_ptro_1821, retro_ptro_1830, retro_ptro_2058, retro_ptro_2290, retro_ptro_2559, retro_ptro_2716, retro_ptro_3119, retro_ptro_3278, retro_ptro_363, retro_ptro_463, retro_ptro_586, retro_ptro_61, retro_ptro_637, retro_ptro_696, retro_ptro_970, retro_ptro_980,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_292 60.61 96.04
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2. retro_cfam_404 60.78 100.00
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3. retro_cfam_634 58.95 91.09
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4. retro_cfam_649 75.41 59.41
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5. retro_cfam_1056 72.37 73.27
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6. retro_cfam_1233 65.79 74.26
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7. retro_cfam_1318 67.33 99.01
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8. retro_cfam_1392 66.34 98.02
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9. retro_cfam_1522 57.43 99.01
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10. retro_cfam_1667 64.65 95.05
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11. retro_cfam_1904 69.31 99.01
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12. retro_cfam_2202 52.04 95.05
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Download FASTA sequences of all ENSCAFG00000010045 retrocopies