RetrogeneDB ID: | retro_btau_1746 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:69351724..69351994(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSBTAG00000018768 | ||
Aliases: | None | ||
Description: | Non-histone chromosomal protein HMG-14 [Source:UniProtKB/Swiss-Prot;Acc:P02316] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 92.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPKRKVSSAEGAAKEEPKRRSARLSAKPAPAKVETKPKKAAGKDKSSDKKVQTKGKRGAKGKQAEVANQE |
.P.RK.SSA.G...E.PKR...RLS.K..P.K.ETKPKK.AGKDKSSD.KVQTKG..GA.GKQ.E.ANQE | |
Retrocopy | VPQRKISSASGVG-EVPKRKAGRLSTKSTPVKMETKPKKVAGKDKSSDRKVQTKGGKGAMGKQVEMANQE |
Parental | TKEDLPAENGETKNEESPASDEA |
T.EDL.A.NGE..N.E.PASD.A | |
Retrocopy | T-EDLLASNGENGN-ECPASDGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .22 RPM | 73 .54 RPM |
ERP005899_muscle | 0 .00 RPM | 132 .66 RPM |
SRP017611_brain | 0 .00 RPM | 40 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 103 .96 RPM |
SRP017611_liver | 0 .00 RPM | 47 .04 RPM |
SRP030211_testis | 0 .00 RPM | 89 .62 RPM |