RetrogeneDB ID: | retro_btau_504 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 13:3071763..3072051(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSBTAG00000018768 | ||
Aliases: | None | ||
Description: | Non-histone chromosomal protein HMG-14 [Source:UniProtKB/Swiss-Prot;Acc:P02316] |
Percent Identity: | 74.26 % |
Parental protein coverage: | 97.03 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RKVSSAEGAAKEEPKRRSARLSA-KPAPAKVE-TKPKKAAGKDKSSDKKVQTKGKRGAKGKQAEVANQET |
..VSS.EG.AKEEPK.R..RLSA.KPAP..VE..KPKKA.GK..SS.KK..T.GKRGAKG.QAEV.NQET | |
Retrocopy | QEVSSTEGVAKEEPKGRLGRLSA<KPAPERVE<NKPKKAVGKGESSNKKA*TNGKRGAKGQQAEVDNQET |
Parental | KE-DLPAENGETKNEESPASDEAEEKEAKSD |
KE.DLP.EN.ETKNEESPASDE..EKEAKSD | |
Retrocopy | KE<DLPVENAETKNEESPASDE-DEKEAKSD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 73 .54 RPM |
ERP005899_muscle | 0 .00 RPM | 132 .66 RPM |
SRP017611_brain | 0 .00 RPM | 40 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 103 .96 RPM |
SRP017611_liver | 0 .00 RPM | 47 .04 RPM |
SRP030211_testis | 0 .00 RPM | 89 .62 RPM |