RetrogeneDB ID: | retro_btau_1801 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:16256920..16257203(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSBTAG00000018768 | ||
Aliases: | None | ||
Description: | Non-histone chromosomal protein HMG-14 [Source:UniProtKB/Swiss-Prot;Acc:P02316] |
Percent Identity: | 50.52 % |
Parental protein coverage: | 95.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPKRKVSSAEGAAKEEPKRRSARLSAKPAPAKVETKPKKAAGKDKSSDKKVQTKGKRGAKGKQAEVANQE |
MP.R.VS....A.K.EPKR..ARLS.K.....V...P.KAAGK.KS...KVQT.GKR...GKQAE....E | |
Retrocopy | MPQRRVSAVQSAVKREPKR-CARLSVKLVATNVKMNPEKAAGKAKSLGRKVQTNGKRETNGKQAE-ETKE |
Parental | TKEDLPAENGE-TKNEESPASDEAEEK |
.K.DLP..N.E...N..S....E.E.K | |
Retrocopy | LKTDLPEKNRE>EQNLASHEAGEKEAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 73 .54 RPM |
ERP005899_muscle | 0 .00 RPM | 132 .66 RPM |
SRP017611_brain | 0 .00 RPM | 40 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 103 .96 RPM |
SRP017611_liver | 0 .00 RPM | 47 .04 RPM |
SRP030211_testis | 0 .00 RPM | 89 .62 RPM |
Species | RetrogeneDB ID |
---|---|
Canis familiaris | retro_cfam_2202 |
Equus caballus | retro_ecab_1130 |