RetrogeneDB ID: | retro_ptro_1454 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 21:17814593..17814842(+) | ||
Located in intron of: | ENSPTRG00000013848 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGN1 | ||
Ensembl ID: | ENSPTRG00000031426 | ||
Aliases: | None | ||
Description: | High mobility group nucleosome binding domain 1 [Source:UniProtKB/TrEMBL;Acc:K7DN21] |
Percent Identity: | 70.93 % |
Parental protein coverage: | 82. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KEEPKRRSARLSAKP-PAKVEAKPKKAAA-KDKSSDKKVQTK-GKRG-AKGKQAEVANQETKEDLPAENG |
KE.PKR.SA.LSAKP.PAKVE...KK....K.KS.DK.VQTK.GK.G.AK.KQ..V.NQETK.DLPAENG | |
Retrocopy | KEKPKRQSAWLSAKPAPAKVEMRLKKGSR<KYKSLDKDVQTK>GKGGGAKRKQTQVTNQETK-DLPAENG |
Parental | ETKTEESPASDEAGEK |
ETKT.ESPASDEA.E. | |
Retrocopy | ETKTNESPASDEARER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .02 RPM | 24 .15 RPM |
SRP007412_cerebellum | 0 .04 RPM | 17 .57 RPM |
SRP007412_heart | 0 .03 RPM | 17 .72 RPM |
SRP007412_kidney | 0 .03 RPM | 44 .41 RPM |
SRP007412_liver | 0 .00 RPM | 29 .20 RPM |
SRP007412_testis | 0 .11 RPM | 38 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_1842 |