RetrogeneDB ID: | retro_cfam_378 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 10:33392274..33392885(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSCAFG00000013659 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284] |
Percent Identity: | 68.57 % |
Parental protein coverage: | 50.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | ESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLE-IEFKETQAL-VLAP |
ESLL.G.Y..GFEKPSAIQ..AI.PCIKGY..IAQAQS..GKT..F.I.I.QQ.E.I..K....L.VL.P | |
Retrocopy | ESLLCGTYTNGFEKPSAIQHQAILPCIKGYYLIAQAQSRDGKTVPFTIWIMQQIE<IRYKGYARL<VLPP |
Parental | TRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM |
TRELAQQIQKVI..LGDYMGA.CH..I.GTNV..E.Q.LQ.EAP.I..G.PG.VFDMLN..YLS.K.IKM | |
Retrocopy | TRELAQQIQKVIMTLGDYMGASCHTHIDGTNVHAEVQ*LQMEAPYIIMGIPGHVFDMLN*KYLSLKYIKM |
Parental | FVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV-LLSATMPTDVLEVTKKFMRD-PIRILVKKEELTLEGI |
F.LDEAD..LS.GFKDQIY.IFQKLN.....V.LLSA..P.DVLE.TKKFMRD.PI.IL..KEELTLEG. | |
Retrocopy | FILDEADDILSHGFKDQIYDIFQKLNSNTHGV<LLSAAKPPDVLEMTKKFMRD<PIWILA-KEELTLEGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 522 .25 RPM |
SRP017611_brain | 0 .00 RPM | 503 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 860 .93 RPM |
SRP017611_liver | 0 .00 RPM | 316 .96 RPM |