RetrogeneDB ID: | retro_tsyr_1905 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_64998:468..1249(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSTSYG00000013050 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284] |
Percent Identity: | 76.25 % |
Parental protein coverage: | 63.88 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 1 |
Parental | LQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM |
.Q.EAPHI.VGTPG.VFDML..RY.S.K.IKMFVL.E.DE.LS.GFKDQIY.IFQK.N...QVVLLS... | |
Retrocopy | VQMEAPHIIVGTPGQVFDMLIWRYPSLKYIKMFVLNETDEILSHGFKDQIYDIFQKFNSNTQVVLLSTII |
Parental | PTDVLEVTKKFMRD-PIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKV |
P.DVLE.TKKFM.D.P..I.V.K.E.TL.GI.QFYINVE.EEWKLD.LCDLYETLTITQ.V.F.NTRRKV | |
Retrocopy | PSDVLEETKKFMGD>PFLIFVMKKEQTLDGIHQFYINVE*EEWKLDILCDLYETLTITQTVFFNNTRRKV |
Parental | DWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNREN |
..LTEKMH..DFTVSA.HGDMDQKE.DVIMREF.SGSSRVLITTDLL.RGIDV.QVSLVINYDLPTNREN | |
Retrocopy | NCLTEKMHV*DFTVSAIHGDMDQKE*DVIMREFHSGSSRVLITTDLLPRGIDV*QVSLVINYDLPTNREN |
Parental | YIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNVADLI |
YIH.IG..G.FG.KGVAIN.VTE.DKR.L.DI..FYNT..EEMP.N.ADLI | |
Retrocopy | YIHGIG*DGQFGCKGVAINMVTELDKRTL*DI*AFYNTSIEEMPLNIADLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |