Parental gene: | Eif4a2, ENSRNOG00000001815 |
| Aliases: | None |
| Description: | Eukaryotic initiation factor 4A-II [Source:UniProtKB/Swiss-Prot;Acc:Q5RKI1] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 11:84411365..84417958(-) |
>ENSRNOG00000001815
ATGTCTGGTGGCTCCGCGGATTACAACAGAGAACATGGCGGCCCAGAGGGAATGGACCCCGATGGTGTCATCGAGAGCAA
CTGGAATGAAATTGTTGATAACTTTGATGATATGAATTTAAAGGAGTCCCTTCTTCGAGGCATCTATGCTTATGGTTTTG
AGAAGCCTTCAGCTATTCAGCAGAGAGCTATAATCCCATGTATTAAAGGATATGATGTGATTGCTCAAGCTCAGTCAGGT
ACTGGCAAGACAGCCACATTTGCTATTTCCATCCTGCAACAGTTGGAGATTGAGTTCAAGGAGACCCAAGCACTAGTATT
GGCCCCCACCAGAGAACTGGCTCAACAGATCCAAAAGGTCATTTTGGCTCTTGGAGATTATATGGGAGCAACTTGTCATG
CTTGCATTGGAGGAACAAATGTTCGAAATGAAATGCAGAAGTTGCAGGCTGAAGCCCCTCATATTGTTGTTGGCACTCCT
GGGAGAGTATTTGATATGCTAAACAGAAGATACCTTTCTCCAAAATGGATCAAAATGTTTGTTTTGGATGAAGCAGATGA
AATGTTGAGCCGAGGGTTTAAGGATCAGATCTATGAGATTTTCCAAAAATTAAATACAAGCATTCAGGTTGTGTTACTTT
CTGCCACAATGCCAACTGATGTCCTAGAAGTGACCAAGAAATTCATGAGAGATCCAATTCGAATTCTGGTGAAGAAGGAA
GAATTGACCCTTGAAGGAATTAAACAATTTTATATTAATGTTGAGCGAGAGGAGTGGAAGCTGGACACTCTTTGTGACTT
GTATGAGACTTTGACTATCACACAAGCAGTTATTTTTCTCAATACAAGGCGCAAGGTGGACTGGCTCACGGAGAAAATGC
ATGCCAGGGACTTCACAGTTTCTGCTCTGCATGGTGACATGGACCAGAAGGAAAGAGATGTCATCATGAGGGAATTCCGA
TCAGGGTCAAGCCGTGTTCTGATCACTACTGACTTGTTGGCTCGTGGGATTGATGTGCAACAAGTGTCCTTGGTTATAAA
CTATGATCTACCTACCAATCGTGAAAACTATATTCACAGAATTGGCAGAGGGGGTCGATTTGGGAGGAAAGGTGTGGCTA
TAAACTTTGTTACTGAAGAAGACAAGAGGATTCTTCGTGACATTGAGACTTTCTACAATACTACAGTGGAGGAAATGCCC
ATGAATGTGGCTGACCTAATTTAA
ATGTCTGGTGGCTCCGCGGATTACAACAGAGAACATGGCGGCCCAGAGGGAATGGACCCCGATGGTGTCATCGAGAGCAA
CTGGAATGAAATTGTTGATAACTTTGATGATATGAATTTAAAGGAGTCCCTTCTTCGAGGCATCTATGCTTATGGTTTTG
AGAAGCCTTCAGCTATTCAGCAGAGAGCTATAATCCCATGTATTAAAGGATATGATGTGATTGCTCAAGCTCAGTCAGGT
ACTGGCAAGACAGCCACATTTGCTATTTCCATCCTGCAACAGTTGGAGATTGAGTTCAAGGAGACCCAAGCACTAGTATT
GGCCCCCACCAGAGAACTGGCTCAACAGATCCAAAAGGTCATTTTGGCTCTTGGAGATTATATGGGAGCAACTTGTCATG
CTTGCATTGGAGGAACAAATGTTCGAAATGAAATGCAGAAGTTGCAGGCTGAAGCCCCTCATATTGTTGTTGGCACTCCT
GGGAGAGTATTTGATATGCTAAACAGAAGATACCTTTCTCCAAAATGGATCAAAATGTTTGTTTTGGATGAAGCAGATGA
AATGTTGAGCCGAGGGTTTAAGGATCAGATCTATGAGATTTTCCAAAAATTAAATACAAGCATTCAGGTTGTGTTACTTT
CTGCCACAATGCCAACTGATGTCCTAGAAGTGACCAAGAAATTCATGAGAGATCCAATTCGAATTCTGGTGAAGAAGGAA
GAATTGACCCTTGAAGGAATTAAACAATTTTATATTAATGTTGAGCGAGAGGAGTGGAAGCTGGACACTCTTTGTGACTT
GTATGAGACTTTGACTATCACACAAGCAGTTATTTTTCTCAATACAAGGCGCAAGGTGGACTGGCTCACGGAGAAAATGC
ATGCCAGGGACTTCACAGTTTCTGCTCTGCATGGTGACATGGACCAGAAGGAAAGAGATGTCATCATGAGGGAATTCCGA
TCAGGGTCAAGCCGTGTTCTGATCACTACTGACTTGTTGGCTCGTGGGATTGATGTGCAACAAGTGTCCTTGGTTATAAA
CTATGATCTACCTACCAATCGTGAAAACTATATTCACAGAATTGGCAGAGGGGGTCGATTTGGGAGGAAAGGTGTGGCTA
TAAACTTTGTTACTGAAGAAGACAAGAGGATTCTTCGTGACATTGAGACTTTCTACAATACTACAGTGGAGGAAATGCCC
ATGAATGTGGCTGACCTAATTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 89 .09 RPM |
| SRP017611_kidney | 270 .82 RPM |
| SRP017611_brain | 364 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000014724 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000013659 | ortholog_one2one | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000011183 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000011502 | ortholog_one2one | 5 retrogenes | |
| Echinops telfairi | ENSETEG00000018565 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000156976 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000005867 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000011737 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000007377 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003702 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000006633 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000005011 | ortholog_one2one | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000010729 | ortholog_one2one | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000004170 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000014384 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000015718 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000030628 | within_species_paralog | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000012601 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000002268 | ortholog_one2one | 11 retrogenes | |
| Takifugu rubripes | ENSTRUG00000005660 | ortholog_one2one | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000013050 | ortholog_one2one | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1163 | 74.04 | 50.37 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2340 | 84.11 | 73.22 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000001815 retrocopies