RetrogeneDB ID: | retro_dnov_2018 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_42486:82748..83614(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSDNOG00000011502 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284] |
Percent Identity: | 92.76 % |
Parental protein coverage: | 71.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | AIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATC |
AIIPCIKGYDVIAQAQSGT.KTATFAISILQQ.EIEFKETQALV.APTRELAQQIQKVILALGDYMGATC | |
Retrocopy | AIIPCIKGYDVIAQAQSGTSKTATFAISILQQ*EIEFKETQALVSAPTRELAQQIQKVILALGDYMGATC |
Parental | HACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ |
HACI.GTNVRNEM.KLQAEAPHIVVGTPGRVF.MLNRRYLSPKWIKMFVLDEADE.LS.GFKDQIYEIFQ | |
Retrocopy | HACIRGTNVRNEMKKLQAEAPHIVVGTPGRVFEMLNRRYLSPKWIKMFVLDEADEILSQGFKDQIYEIFQ |
Parental | KLNTSIQVVLLSATMPTDVLEVTK-KFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL |
KLNTSIQVVLLSATMPTDVLEVTK.KFMRDP..ILVKKEELTLEGIKQFYINVERE.WKLDTLCDLYETL | |
Retrocopy | KLNTSIQVVLLSATMPTDVLEVTK<KFMRDPV*ILVKKEELTLEGIKQFYINVEREKWKLDTLCDLYETL |
Parental | TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQ |
TITQAVIFLNTR.KVDWLTEKMHARDFTVSALHG.MD.KERDVIMREFRSGSSR.LITTDLLA.GIDVQQ | |
Retrocopy | TITQAVIFLNTRCKVDWLTEKMHARDFTVSALHGNMDRKERDVIMREFRSGSSRILITTDLLACGIDVQQ |
Parental | VSLVINYDLP |
VSLV....LP | |
Retrocopy | VSLVYMTYLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .78 RPM | 303 .18 RPM |
SRP012922_cerebellum | 0 .96 RPM | 516 .06 RPM |
SRP012922_heart | 0 .46 RPM | 255 .93 RPM |
SRP012922_kidney | 0 .82 RPM | 222 .60 RPM |
SRP012922_liver | 0 .31 RPM | 91 .65 RPM |
SRP012922_lung | 1 .68 RPM | 268 .34 RPM |
SRP012922_quadricep_muscle | 0 .87 RPM | 341 .50 RPM |
SRP012922_spleen | 0 .57 RPM | 238 .08 RPM |