RetrogeneDB ID: | retro_tbel_2048 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_837:208736..209622(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSTBEG00000002268 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284] |
Percent Identity: | 87.5 % |
Parental protein coverage: | 74.31 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | LAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL |
L...IQKVILA.G.YMG.TC..CIGGTNV.NEMQKL.AEAPHIV.GTPGRVFD.LNR.YLSPKWIKMFVL | |
Retrocopy | LVLKIQKVILAFGNYMGVTCYGCIGGTNV*NEMQKLHAEAPHIVIGTPGRVFDTLNR*YLSPKWIKMFVL |
Parental | DEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKK-FMRDPIRILVKKEELTLEGIKQFY |
DE.DEMLS.GFKDQIYEIFQKLNTS.QVVLLSATMPTDVLEVTKK.FMRD.IRILVKKEEL.LE.IK.FY | |
Retrocopy | DETDEMLS*GFKDQIYEIFQKLNTSFQVVLLSATMPTDVLEVTKK>FMRDLIRILVKKEELILERIK*FY |
Parental | INVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRS |
IN.EREEWKLD..CDLYETLTITQAVIFLNTR.KVDWLTEKM.ARDFT.SALHGD.DQKERDVIMREF.S | |
Retrocopy | INIEREEWKLDIPCDLYETLTITQAVIFLNTRCKVDWLTEKMRARDFTISALHGDVDQKERDVIMREFWS |
Parental | GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETF |
GSS.VLIT.DLLA.GIDVQQVSLVINYDLPTNRENYI.RIGRGGRFG.KGVAINFVT.EDKRIL.DIET. | |
Retrocopy | GSSHVLITNDLLAHGIDVQQVSLVINYDLPTNRENYIYRIGRGGRFGKKGVAINFVTKEDKRILHDIETL |
Parental | YNTTVEEMPMNVADLI |
YNTTVEEMPMNVADLI | |
Retrocopy | YNTTVEEMPMNVADLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |