RetrogeneDB ID:

retro_ogar_2830

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873669.1:849013..849829(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF4A2
Ensembl ID:ENSOGAG00000010729
Aliases:None
Description:eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284]


Retrocopy-Parental alignment summary:






>retro_ogar_2830
ATGTCTGGTGGCTCTGCGGATTATAACAGAGAACATGGCGGCCCAGAGGGAATGGACCCCGATGGTGTTGAGAGCAATTG
AAATGAGATTGTTGATAATTTTGATGATATGAATTTAAAGGAGTCTCTTCTTCAGGGCATCTATGCTTATGGTTTTGAGA
AGCCTTCTGCTATTCAGCAGAGAGCTATTATTCCTTGTATTAAAGGGTATGATGTGATTGCTCAAGCTCAGTCAGGTACC
GGCAAGACAGCCACATTTGCTATTTCCATCCTGCAACAGTTGGAGAATGAGTTCAAGGAGACCCAAGCACTAGTATTGGC
CCCCACCAAAGAACTGGCGCAACAAATCCAAAAGGTAATTCTGGCACTTGGAGACTATATGGGAGCAACTTATCATGCTT
GCATTGGTGGAACGAATGTTCGAAATGAAATGCAAAAACTTCAGGCTGAAGCACCACATATTGTAGTTGGTACACCAGGG
AAAGTGTTTGATATGTTAAACAGAAGATACCTCTCTCCAAAATGGATCAAAATGTTTGTTTTGGATGAAGCAGATAAAAT
GTTGAGCTGAGGGTTTAAGGATCAAATCTATGAGATTTTCCAAAAATTAAATACAAGTATTCAGGTTGTGTTGCTTTCTG
CTACAATGCCAACTGATGTGTTGGAAGTGACCAAAAAATTCACGAGAGATCCAATTCGAATTCTGGTGAAAAAGGAAGAA
CTGACCCTTGAAGGAATCAAACAGTTTTATATTAATGTTGAAAGAGAGGAATGGAAGTTGGATACACTTTGTGACTTGTA
TGAGACACTGACCATT

ORF - retro_ogar_2830 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 96.34 %
Parental protein coverage: 67.08 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSGGSADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKG
MSGGSADYNREHGGPEGMDPDGV.ESN.NEIVDNFDDMNLKESLL.GIYAYGFEKPSAIQQRAIIPCIKG
RetrocopyMSGGSADYNREHGGPEGMDPDGV-ESN*NEIVDNFDDMNLKESLLQGIYAYGFEKPSAIQQRAIIPCIKG
ParentalYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTN
YDVIAQAQSGTGKTATFAISILQQLE.EFKETQALVLAPT.ELAQQIQKVILALGDYMGAT.HACIGGTN
RetrocopyYDVIAQAQSGTGKTATFAISILQQLENEFKETQALVLAPTKELAQQIQKVILALGDYMGATYHACIGGTN
ParentalVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQV
VRNEMQKLQAEAPHIVVGTPG.VFDMLNRRYLSPKWIKMFVLDEAD.MLS.GFKDQIYEIFQKLNTSIQV
RetrocopyVRNEMQKLQAEAPHIVVGTPGKVFDMLNRRYLSPKWIKMFVLDEADKMLS*GFKDQIYEIFQKLNTSIQV
ParentalVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI
VLLSATMPTDVLEVTKKF.RDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI
RetrocopyVLLSATMPTDVLEVTKKFTRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2830 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 52 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000147242 retrocopies
Canis familiaris ENSCAFG000000136591 retrocopy
Cavia porcellus ENSCPOG000000111831 retrocopy
Dasypus novemcinctus ENSDNOG000000115025 retrocopies
Echinops telfairi ENSETEG000000185653 retrocopies
Homo sapiens ENSG000001569762 retrocopies
Gorilla gorilla ENSGGOG000000058672 retrocopies
Macropus eugenii ENSMEUG000000117371 retrocopy
Microcebus murinus ENSMICG000000073771 retrocopy
Macaca mulatta ENSMMUG000000037022 retrocopies
Nomascus leucogenys ENSNLEG000000066331 retrocopy
Oryctolagus cuniculus ENSOCUG000000050113 retrocopies
Otolemur garnettii ENSOGAG000000074951 retrocopy
Otolemur garnettii ENSOGAG000000081322 retrocopies
Otolemur garnettii ENSOGAG00000010729 2 retrocopies
retro_ogar_2830 , retro_ogar_943,
Ochotona princeps ENSOPRG000000041701 retrocopy
Pongo abelii ENSPPYG000000143842 retrocopies
Pan troglodytes ENSPTRG000000157181 retrocopy
Rattus norvegicus ENSRNOG000000018152 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000126011 retrocopy
Tupaia belangeri ENSTBEG0000000226811 retrocopies
Takifugu rubripes ENSTRUG000000056602 retrocopies
Tarsius syrichta ENSTSYG000000130503 retrocopies



Copyright © RetrogeneDB 2014-2017