Parental gene:

EIF4A2, ENSG00000156976

Aliases:EIF4A2, BM-010, DDX2B, EIF4A, EIF4F, eIF-4A-II, eIF4A-II
Description:eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284]
Organism:Human (Homo sapiens)
Coordinates:3:186500993..186507689(+)


>ENSG00000156976
ATGTCTGGTGGCTCCGCGGATTATAACAGAGAACATGGCGGCCCAGAGGGAATGGACCCCGATGGTGTCATCGAGAGCAA
CTGGAATGAGATTGTTGATAACTTTGATGATATGAATTTAAAGGAGTCTCTCCTTCGTGGCATCTATGCTTACGGTTTTG
AGAAGCCTTCCGCTATTCAGCAGAGAGCTATTATTCCCTGTATTAAAGGGTATGATGTGATTGCTCAAGCTCAGTCAGGT
ACTGGCAAGACAGCCACATTTGCTATTTCCATCCTGCAACAGTTGGAGATTGAGTTCAAGGAGACCCAAGCACTAGTATT
GGCCCCCACCAGAGAACTGGCTCAACAGATCCAAAAGGTAATTCTGGCACTTGGAGACTATATGGGAGCCACTTGTCATG
CCTGCATTGGTGGAACAAATGTTCGAAATGAAATGCAAAAACTGCAGGCTGAAGCACCACATATTGTTGTTGGTACACCC
GGGAGAGTGTTTGATATGTTAAACAGAAGATACCTTTCTCCAAAATGGATCAAAATGTTTGTTTTGGATGAAGCAGATGA
AATGTTGAGCCGTGGTTTTAAGGATCAAATCTATGAGATTTTCCAAAAACTAAACACAAGTATTCAGGTTGTGTTGCTTT
CTGCCACAATGCCAACTGATGTGTTGGAAGTGACCAAAAAATTCATGAGAGATCCAATTCGAATTCTGGTGAAAAAGGAA
GAATTGACCCTTGAAGGAATCAAACAGTTTTATATTAATGTTGAGAGAGAGGAATGGAAGTTGGATACACTTTGTGACTT
GTACGAGACACTGACCATTACACAGGCTGTTATTTTTCTCAATACGAGGCGCAAGGTGGACTGGCTGACTGAGAAGATGC
ATGCCAGAGACTTCACAGTTTCTGCTCTGCATGGTGACATGGACCAGAAGGAGAGAGATGTTATCATGAGGGAATTCCGG
TCAGGGTCAAGTCGTGTTCTGATCACTACTGACTTGTTGGCTCGCGGGATTGATGTGCAACAAGTGTCTTTGGTTATAAA
TTATGATCTACCTACCAATCGTGAAAACTATATTCACAGAATTGGCAGAGGGGGTCGATTTGGGAGGAAAGGTGTGGCTA
TAAACTTTGTTACTGAAGAAGACAAGAGGATTCTTCGTGACATTGAGACTTTCTACAATACTACAGTGGAGGAGATGCCC
ATGAATGTGGCTGACCTTATTTAA

Library Parental gene expression (RPM)
bodymap2_liver 114 .05 RPM
bodymap2_lung 530 .19 RPM
bodymap2_breast 317 .26 RPM
bodymap2_adipose 203 .43 RPM
bodymap2_adrenal 423 .29 RPM
bodymap2_skeletal_muscle 578 .94 RPM
bodymap2_thyroid 856 .03 RPM
bodymap2_prostate 806 .01 RPM
bodymap2_colon 1022 .71 RPM
bodymap2_testis 536 .84 RPM
bodymap2_brain 1018 .52 RPM
bodymap2_heart 263 .13 RPM
bodymap2_white_blood_cells 366 .33 RPM
bodymap2_lymph_node 664 .69 RPM
bodymap2_ovary 698 .82 RPM
bodymap2_kidney 383 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014724 ortholog_one2one 2 retrogenes
retro_btau_258, retro_btau_522,
Canis familiaris ENSCAFG00000013659 ortholog_one2one 1 retrogene
retro_cfam_378,
Cavia porcellus ENSCPOG00000011183 ortholog_one2one 1 retrogene
retro_cpor_639,
Dasypus novemcinctus ENSDNOG00000011502 ortholog_one2one 5 retrogenes
retro_dnov_1264, retro_dnov_2018, retro_dnov_2066, retro_dnov_648, retro_dnov_869,
Echinops telfairi ENSETEG00000018565 ortholog_one2one 3 retrogenes
retro_etel_1174, retro_etel_2164, retro_etel_451,
Homo sapiens ENSG00000161960 within_species_paralog 10 retrogenes
retro_hsap_1004, retro_hsap_1182, retro_hsap_1252, retro_hsap_1270, retro_hsap_1796, retro_hsap_2520, retro_hsap_4836, retro_hsap_4873, retro_hsap_4931, retro_hsap_610,
Gorilla gorilla ENSGGOG00000005867 ortholog_one2one 2 retrogenes
retro_ggor_525, retro_ggor_712,
Macropus eugenii ENSMEUG00000011737 ortholog_one2one 1 retrogene
retro_meug_237,
Microcebus murinus ENSMICG00000007377 ortholog_one2one 1 retrogene
retro_mmur_525,
Macaca mulatta ENSMMUG00000003702 ortholog_one2many 2 retrogenes
retro_mmul_1055, retro_mmul_2450,
Nomascus leucogenys ENSNLEG00000006633 ortholog_one2one 1 retrogene
retro_nleu_2589,
Oryctolagus cuniculus ENSOCUG00000005011 ortholog_one2one 3 retrogenes
retro_ocun_392, retro_ocun_696, retro_ocun_763,
Otolemur garnettii ENSOGAG00000010729 ortholog_one2one 2 retrogenes
retro_ogar_2830, retro_ogar_943,
Ochotona princeps ENSOPRG00000004170 ortholog_one2one 1 retrogene
retro_opri_498,
Pongo abelii ENSPPYG00000014384 ortholog_one2one 2 retrogenes
retro_pabe_596, retro_pabe_677,
Pan troglodytes ENSPTRG00000015718 ortholog_one2one 1 retrogene
retro_ptro_437,
Rattus norvegicus ENSRNOG00000001815 ortholog_one2one 2 retrogenes
retro_rnor_1163, retro_rnor_2340,
Ictidomys tridecemlineatus ENSSTOG00000012601 ortholog_one2one 1 retrogene
retro_itri_858,
Tupaia belangeri ENSTBEG00000002268 ortholog_one2one 11 retrogenes
retro_tbel_114, retro_tbel_1488, retro_tbel_1500, retro_tbel_2048, retro_tbel_2524, retro_tbel_2729, retro_tbel_2733, retro_tbel_3159, retro_tbel_3793, retro_tbel_4599, retro_tbel_841,
Takifugu rubripes ENSTRUG00000005660 ortholog_one2one 2 retrogenes
retro_trub_14, retro_trub_6,
Tarsius syrichta ENSTSYG00000013050 ortholog_one2one 3 retrogenes
retro_tsyr_1905, retro_tsyr_903, retro_tsyr_935,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_593 79.66 92.95
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2. retro_hsap_878 82.54 60.26
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Download FASTA sequences of all ENSG00000156976 retrocopies