RetrogeneDB ID: | retro_tsyr_935 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_246868:399..1517(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSTSYG00000013050 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284] |
Percent Identity: | 85.03 % |
Parental protein coverage: | 91.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQS |
R....P.GM.P.GVIESNWNEIVD.FDDMNL.ESLLRG.YAYGFEKPSAIQQ.AI.PCIKGYDVIAQ.QS | |
Retrocopy | RQWPRPDGMEPEGVIESNWNEIVDSFDDMNLSESLLRGFYAYGFEKPSAIQQQAILPCIKGYDVIAQVQS |
Parental | GTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ |
GTGK.ATFAISILQQ.E...K.TQALVLAPTRELAQQIQKV..ALGDYM.A.CHA.I.GTNVR.E.QKLQ | |
Retrocopy | GTGKMATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMCASCHAHIEGTNVRAEVQKLQ |
Parental | AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPT |
.E.PHI.VGTPGRVFDMLNRRYLSPK.IKMFVLDEADEMLSRGFKDQIY.IFQKLN...QVVLLS...P. | |
Retrocopy | MEEPHIIVGTPGRVFDMLNRRYLSPKHIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSTAVPS |
Parental | DVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWL |
DVLEVTKKFMRDPI.ILVKKEELTLE...QFYINVEREEWKLDTLCDLYETLTITQAVIF.NT.RKVDWL | |
Retrocopy | DVLEVTKKFMRDPIQILVKKEELTLEDVRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTWRKVDWL |
Parental | TEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI-NYDLPTNRENYI |
TEKMHARDFTVSA.HGDMDQKERDVIMREF.SGSSR.LITTDLLARGIDVQQVS.VI..YDLPTNRENYI | |
Retrocopy | TEKMHARDFTVSAMHGDMDQKERDVIMREFLSGSSRLLITTDLLARGIDVQQVSIVI<YYDLPTNRENYI |
Parental | HRIGRGGRFGRKGVAINFVTEEDK |
HRIGRGGRFG.KGVAIN.V.EE.. | |
Retrocopy | HRIGRGGRFGHKGVAINMVREEKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |