RetrogeneDB ID: | retro_dnov_2066 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_45327:10579..11208(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSDNOG00000011502 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284] |
Percent Identity: | 81.86 % |
Parental protein coverage: | 51.84 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | RVFDMLNR-RYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFM |
R.FDMLNR.RYLSPK.IKMFVLDEADEML...GFKDQIYEIFQKLNTSIQVVLLSATM.TDVLEVTKKFM | |
Retrocopy | RMFDMLNR>RYLSPK*IKMFVLDEADEMLKL>GFKDQIYEIFQKLNTSIQVVLLSATMRTDVLEVTKKFM |
Parental | RDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFT |
RDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTIT....FLNTR.KVDWLTEKMHARDFT | |
Retrocopy | RDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITLVDVFLNTRPKVDWLTEKMHARDFT |
Parental | VSALHGDMDQKERDVI-MREFRSGSSRVLITTDLLARGIDVQQV-SLVINYDLPTNRENYIHRIGRGGRF |
VSALH...D.........REF.SGSSRVLITTDLLA...D.QQV...VINYDLP.N..NYIHRIGR.GR. | |
Retrocopy | VSALHS--DMDQQEML>LREFQSGSSRVLITTDLLAHRTDLQQV<ASVINYDLPSNCGNYIHRIGREGR* |
Parental | GRKGV |
.R.GV | |
Retrocopy | *RDGV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 303 .18 RPM |
SRP012922_cerebellum | 0 .00 RPM | 516 .06 RPM |
SRP012922_heart | 0 .23 RPM | 255 .93 RPM |
SRP012922_kidney | 0 .00 RPM | 222 .60 RPM |
SRP012922_liver | 0 .00 RPM | 91 .65 RPM |
SRP012922_lung | 0 .00 RPM | 268 .34 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 341 .50 RPM |
SRP012922_spleen | 0 .11 RPM | 238 .08 RPM |