RetrogeneDB ID: | retro_tsyr_903 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_234791:2320..3098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSTSYG00000013050 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A2 [Source:HGNC Symbol;Acc:3284] |
Percent Identity: | 67.78 % |
Parental protein coverage: | 65.36 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | QIQKVILALGDYMGATCHACIGGTNVR-NEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLD |
QIQKVILALGD.....C....GGTNV...E..KL...APH....TPGRVFDM....RY.SP.WI.MF.LD | |
Retrocopy | QIQKVILALGDTWEQNCSRLHGGTNVQ<KEV*KLRTGAPHNC--TPGRVFDMKQK<RYSSPEWITMFLLD |
Parental | EADEMLSRGFK-DQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEG-IKQFY |
EA.E..S.GF..D.IYE.FQKL..SIQ..LLSATMPT.VLEVTKKFMRDPI.I...KEELT.EG....FY | |
Retrocopy | EAVE--S*GFL>DLIYELFQKLTISIQGSLLSATMPTHVLEVTKKFMRDPIQIMMRKEELTPEG<VTRFY |
Parental | INVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRS |
.N.EREE.KLDTL...Y.TLTI.QAVIFL.TR....WLT.KMH.RDFTVSALHG.M.QKE.DVIMREFRS | |
Retrocopy | MNTEREEQKLDTLSNMYKTLTIAQAVIFLSTRGTMGWLTGKMHTRDFTVSALHGNMEQKEGDVIMREFRS |
Parental | GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED |
G..RVLITTDLLA.GIDV.Q.SLVIN...PTN.EN.IH.I...GRFGRKG.A.NFVTE.. | |
Retrocopy | GFGRVLITTDLLACGIDV*QASLVINCYPPTNHEN*IHQIVE-GRFGRKG-ATNFVTEKE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |