RetrogeneDB ID: | retro_cpor_639 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_209:188349..189366(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSCPOG00000011183 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96.47 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSGGSADYNSREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIK |
MSGGS.DYN.REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLL.GIYAYGFEKPSAIQQRAIIPCIK | |
Retrocopy | MSGGSTDYN-REHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLQGIYAYGFEKPSAIQQRAIIPCIK |
Parental | GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGT |
GY.VIAQ.QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGT | |
Retrocopy | GYNVIAQPQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGT |
Parental | NVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ |
NV.NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIK.FVLDEADEMLS.GFKDQIYEIFQKLNTSIQ | |
Retrocopy | NVQNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKIFVLDEADEMLS*GFKDQIYEIFQKLNTSIQ |
Parental | VVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIF |
VVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI.QAVIF | |
Retrocopy | VVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTIMQAVIF |
Parental | LNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDV |
LNTRRKVDWLTEKMHARDFTVSALHG.MDQKERDVIMREFRSGSSRVLITTDLLARG..V | |
Retrocopy | LNTRRKVDWLTEKMHARDFTVSALHGEMDQKERDVIMREFRSGSSRVLITTDLLARGTSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .90 RPM | 393 .13 RPM |
SRP017611_kidney | 1 .67 RPM | 326 .21 RPM |
SRP017611_liver | 1 .92 RPM | 280 .10 RPM |
SRP040447_lung | 0 .50 RPM | 246 .13 RPM |
SRP040447_skeletal_muscle | 0 .72 RPM | 309 .30 RPM |