Parental gene:

EIF4A2, ENSPTRG00000015718

Aliases:None
Description:Pan troglodytes eukaryotic translation initiation factor 4A2 (EIF4A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001246518]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:190851000..190857445(+)


>ENSPTRG00000015718
ATGTCTGGTGGCTCCGCGGATTATAACAGAGAACATGGCGGCCCAGAGGGAATGGACCCCGATGGTGTCATCGAGAGCAA
CTGGAATGAGATTGTTGATAACTTTGATGATATGAATTTAAAGGAGTCTCTCCTTCGTGGCATCTATGCTTACGGTTTTG
AGAAGCCTTCCGCTATTCAGCAGAGAGCTATTATTCCCTGTATTAAAGGGTATGATGTGATTGCTCAAGCTCAGTCAGGT
ACTGGCAAGACAGCCACATTTGCTATTTCCATCCTGCAACAGTTGGAGATTGAGTTCAAGGAGACCCAAGCACTAGTATT
GGCCCCCACCAGAGAACTGGCTCAACAGATCCAAAAGGTAATTCTGGCACTTGGAGACTATATGGGAGCCACTTGTCATG
CCTGCATTGGTGGAACAAATGTTCGAAATGAAATGCAAAAACTGCAGGCTGAAGCACCACATATTGTTGTTGGTACACCC
GGGAGAGTGTTTGATATGTTAAACAGAAGATACCTTTCTCCAAAATGGATCAAAATGTTTGTTTTGGATGAAGCAGATGA
AATGTTGAGCCGTGGTTTTAAGGATCAAATCTATGAGATTTTCCAAAAACTAAACACAAGTATTCAGGTTGTGTTGCTTT
CTGCCACAATGCCAACTGATGTGTTGGAAGTGACCAAAAAATTCATGAGAGATCCAATTCGAATTCTGGTGAAAAAGGAA
GAATTGACCCTTGAAGGAATCAAACAGTTTTATATTAATGTTGAGAGAGAGGAATGGAAGTTGGATACACTTTGTGACTT
GTACGAGACACTGACCATTACACAGGCTGTTATTTTTCTCAATACGAGGCGCAAGGTGGACTGGCTGACTGAGAAAATGC
ATGCCAGAGACTTCACAGTTTCTGCTCTGCATGGTGACATGGACCAGAAGGAGAGAGATGTTATCATGAGGGAATTCCGG
TCAGGGTCAAGTCGTGTTCTGATCACTACTGACTTGTTGGCTCGCGGGATTGATGTGCAACAAGTGTCTTTGGTTATAAA
TTATGATCTACCTACCAATCGTGAAAACTATATTCACAGAATTGGCAGAGGGGGTCGATTTGGGAGGAAAGGTGTGGCTA
TAAACTTTGTTACTGAAGAAGACAAGAGGATTCTTCGTGACATTGAGACTTTCTACAATACTACAGTGGAGGAGATGCCC
ATGAATGTGGCTGACCTTATTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 468 .67 RPM
SRP007412_cerebellum 610 .32 RPM
SRP007412_heart 249 .96 RPM
SRP007412_kidney 242 .35 RPM
SRP007412_liver 101 .18 RPM
SRP007412_testis 227 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014724 ortholog_one2one 2 retrogenes
Canis familiaris ENSCAFG00000013659 ortholog_one2one 1 retrogene
Cavia porcellus ENSCPOG00000011183 ortholog_one2one 1 retrogene
Dasypus novemcinctus ENSDNOG00000011502 ortholog_one2one 5 retrogenes
Echinops telfairi ENSETEG00000018565 ortholog_one2one 3 retrogenes
Homo sapiens ENSG00000156976 ortholog_one2one 2 retrogenes
Gorilla gorilla ENSGGOG00000005867 ortholog_one2one 2 retrogenes
Macropus eugenii ENSMEUG00000011737 ortholog_one2one 1 retrogene
Microcebus murinus ENSMICG00000007377 ortholog_one2one 1 retrogene
Macaca mulatta ENSMMUG00000003702 ortholog_one2many 2 retrogenes
Nomascus leucogenys ENSNLEG00000006633 ortholog_one2one 1 retrogene
Oryctolagus cuniculus ENSOCUG00000005011 ortholog_one2one 3 retrogenes
Otolemur garnettii ENSOGAG00000010729 ortholog_one2one 2 retrogenes
Ochotona princeps ENSOPRG00000004170 ortholog_one2one 1 retrogene
Pongo abelii ENSPPYG00000014384 ortholog_one2one 2 retrogenes
Pan troglodytes ENSPTRG00000008694 within_species_paralog 10 retrogenes
Rattus norvegicus ENSRNOG00000001815 ortholog_one2one 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000012601 ortholog_one2one 1 retrogene
Tupaia belangeri ENSTBEG00000002268 ortholog_one2one 11 retrogenes
Takifugu rubripes ENSTRUG00000005660 ortholog_one2one 2 retrogenes
Tarsius syrichta ENSTSYG00000013050 ortholog_one2one 3 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_437 80.61 71.25
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Download FASTA sequences of all ENSPTRG00000015718 retrocopies