RetrogeneDB ID: | retro_ecab_1020 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 9:82579033..82579443(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL28 | ||
Ensembl ID: | ENSECAG00000026938 | ||
Aliases: | None | ||
Description: | ribosomal protein L28 [Source:HGNC Symbol;Acc:10330] |
Percent Identity: | 68.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQ |
MS.HLQ.MV..N.SS.LIK.N.QT.STEP.NLKA.NS....GLIH.KT.GVEPAA..KGV.VVMKRR... | |
Retrocopy | MSVHLQ*MVLQNSSSSLIKGNMQTCSTEPDNLKALNSSCSSGLIHCKTAGVEPAANSKGVMVVMKRRCD* |
Parental | RKPATSYVRTTINKNARATLSSIRHMIRRNKYRPDLRMAAIRRASAILRSQKPVMVKRKRT-RPTKSS |
.K.ATSY..TTINKN...TLSSI.H.I..NKY.P.L.MAAI.RA.AIL.SQK.VMVKRK.T..PTKSS | |
Retrocopy | QKLATSYMQTTINKNVQDTLSSIQHTI*NNKYHPYLCMAAIHRARAILHSQKLVMVKRKQT<PPTKSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 572 .88 RPM |
SRP021940_cerebellum | 0 .00 RPM | 163 .02 RPM |
SRP021940_embryo | 0 .03 RPM | 494 .65 RPM |
SRP021940_placental_villous | 0 .00 RPM | 235 .26 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 466 .82 RPM |
SRP021940_testis | 0 .00 RPM | 167 .34 RPM |