RetrogeneDB ID: | retro_cpor_127 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_115:2493902..2494316(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000023112 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL28 | ||
Ensembl ID: | ENSCPOG00000012833 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.61 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQ |
MSAHLQW.VV.NCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQ | |
Retrocopy | MSAHLQWIVVWNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQ |
Parental | RKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRM--VRGYGQAGRDKEKPVMVKRKRTRPTKSA |
RKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDL.M...R......R............TRPTKSA | |
Retrocopy | RKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLCMAAIRRASAILRSQKPVMVKRKR-TRPTKSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .16 RPM | 26 .23 RPM |
SRP017611_kidney | 11 .52 RPM | 102 .70 RPM |
SRP017611_liver | 5 .01 RPM | 44 .79 RPM |
SRP040447_lung | 10 .77 RPM | 277 .81 RPM |
SRP040447_skeletal_muscle | 10 .87 RPM | 223 .15 RPM |