RetrogeneDB ID: | retro_fcat_1663 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:17528217..17528603(-) | ||
Located in intron of: | ENSFCAG00000029378 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000005639 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.12 % |
Parental protein coverage: | 94.89 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG-VVVVMKRRSGQ |
SA.LQ.MV...CSSFLIKRNKQTYSTE.N..KA.NS..YN...H.KT.G.EP.ADG.G...VV...RS.Q | |
Retrocopy | SAYLQQMVLQKCSSFLIKRNKQTYSTELNIPKAHNSC-YNR*VHHKTLGMEPVADGRG<LGVVVRPRSHQ |
Parental | RKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRRRA |
.KP.TS...TTINKN.R..L.SIRHMI.KNK..PDL..AAIRRAS.I..SQKP..VKR..A | |
Retrocopy | *KPRTS*DWTTINKNVRGSLCSIRHMILKNKHCPDLCTAAIRRASTIFCSQKPEKVKRKLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 25 .02 RPM |
SRP017611_kidney | 0 .10 RPM | 106 .97 RPM |
SRP017611_liver | 0 .00 RPM | 65 .20 RPM |