RetrogeneDB ID: | retro_fcat_1397 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:53972811..53973096(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000005639 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.42 % |
Parental protein coverage: | 69.34 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | WMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATS |
WMVV.NCSSFL.KRNKQT..TE.NNLKARN.F.Y.GLIH.KTV.VE..ADGKGVVV..K..S.Q.KP.TS | |
Retrocopy | WMVVQNCSSFLVKRNKQTHNTELNNLKARNYFCYSGLIHHKTVSVELVADGKGVVVAVKGKSSQQKPSTS |
Parental | YVRTTINKNARATLSSIRHMIRKNK |
.......K.A..TLSSIRHMI.KNK | |
Retrocopy | SLWPITKKTAQGTLSSIRHMIYKNK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 106 .97 RPM |
SRP017611_liver | 0 .00 RPM | 65 .20 RPM |