RetrogeneDB ID:

retro_fcat_1463

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:D1:94136727..94137025(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000005639
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_1463
TTCTGCTATAATAGGCTGATTCACCTCAAGGCTGTGGGCATGGAGCCTGCAGCTAAAGGCTAAAGTGTGGTGGTGGTCAA
GAAGTGGAGATCTGGCCAGAGAAAGCCTGCCACCTCCTACAAGTGGACCGCCATTACAAGAACGCCAAGGCCGCCCTCAG
CAGCAACCGGGACGTGATCCACAAGAACAAGTGCAGCCCAGATCCGCACGTGGCGGCAGTTCATAGAGCCAGCCCCATCC
CACCCAGCCAGAAGACTGTGATGCTGAAAGGGATGCATCCCGCCCCACCAAGACCTCC

ORF - retro_fcat_1463 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.75 %
Parental protein coverage: 72.99 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTIN-KNARATLSSIRHMIRKNKYRPDL
F.YN.LIH.K.VG.EPAA.G..VVVV.K.RSGQRKPATSY..T.I..KNA.A.LSS.R..I.KNK..PD.
RetrocopyFCYNRLIHLKAVGMEPAAKG*SVVVVKKWRSGQRKPATSYKWTAIT<KNAKAALSSNRDVIHKNKCSPDP
ParentalRMAAIRRASAILRSQKPVMVK-RRRARPTKSS
..AA..RAS.I..SQK.VM.K.R...RPTK.S
RetrocopyHVAAVHRASPIPPSQKTVMLK<RDASRPTKTS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 25 .02 RPM
SRP017611_kidney 0 .00 RPM 106 .97 RPM
SRP017611_liver 0 .00 RPM 65 .20 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1463 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1463 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 29 parental genes, and 117 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000159801 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000376415 retrocopies
Bos taurus ENSBTAG000000233435 retrocopies
Canis familiaris ENSCAFG000000025858 retrocopies
Callithrix jacchus ENSCJAG000000008691 retrocopy
Cavia porcellus ENSCPOG000000128332 retrocopies
Dipodomys ordii ENSDORG000000128092 retrocopies
Equus caballus ENSECAG000000269382 retrocopies
Felis catus ENSFCAG00000005639 15 retrocopies
Homo sapiens ENSG000001081074 retrocopies
Gorilla gorilla ENSGGOG000000226534 retrocopies
Loxodonta africana ENSLAFG000000222572 retrocopies
Macropus eugenii ENSMEUG000000157441 retrocopy
Myotis lucifugus ENSMLUG000000237891 retrocopy
Macaca mulatta ENSMMUG000000159011 retrocopy
Monodelphis domestica ENSMODG000000002751 retrocopy
Mustela putorius furoENSMPUG0000000745010 retrocopies
Mus musculus ENSMUSG0000003043210 retrocopies
Nomascus leucogenys ENSNLEG000000105034 retrocopies
Otolemur garnettii ENSOGAG000000255334 retrocopies
Ochotona princeps ENSOPRG000000004631 retrocopy
Petromyzon marinus ENSPMAG000000086171 retrocopy
Pongo abelii ENSPPYG000000104174 retrocopies
Pan troglodytes ENSPTRG000000115054 retrocopies
Pteropus vampyrus ENSPVAG000000073152 retrocopies
Rattus norvegicus ENSRNOG000000171275 retrocopies
Sorex araneus ENSSARG000000097411 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000080061 retrocopy
Tursiops truncatus ENSTTRG000000024285 retrocopies



Copyright © RetrogeneDB 2014-2017