RetrogeneDB ID: | retro_acar_10 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 4:62241516..62241930(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000006100 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000015980 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSAHLQWMIVRNCSSFLIKRNKQTYSMEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGIVVVLKKRAGQ |
M.AH.QWM.V.NCSSFLIKRNKQ..SM..NNLKA..S..YNGLIH.KTV.VE.A.D.KGI.VVLKK.AGQ | |
Retrocopy | MLAHRQWMTVHNCSSFLIKRNKQMCSMKLNNLKACTSLCYNGLIHHKTVRVELATDDKGIIVVLKKLAGQ |
Parental | RKPATSYEKITINKNARATLSSLRHIIRKNNYRKDLRMAALRRASAILRSQKPVVVKKKRTRATKAA |
.KPATSYEKITINKN..ATL.SL..I..KNNY.KDL..AALR..S.IL.SQKPVVVKKKRTRA.KAA | |
Retrocopy | QKPATSYEKITINKNSHATLISLQLITCKNNYCKDLHIAALRLTSTILCSQKPVVVKKKRTRAIKAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 1169 .87 RPM |
SRP009831_brain | 0 .00 RPM | 203 .75 RPM |
SRP009831_dewlap | 0 .00 RPM | 277 .55 RPM |
SRP009831_embryo | 0 .00 RPM | 558 .77 RPM |
SRP009831_heart | 0 .00 RPM | 327 .84 RPM |
SRP009831_liver | 0 .00 RPM | 278 .18 RPM |
SRP009831_lung | 0 .00 RPM | 339 .31 RPM |
SRP009831_ovary | 0 .00 RPM | 214 .55 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 144 .30 RPM |