RetrogeneDB ID: | retro_fcat_1214 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:136248849..136249148(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000005639 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.38 % |
Parental protein coverage: | 74.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NSFRYNGLIHRKT-VGVEPAADGKGVVVVMKRRSGQRKPATSYVRTT-INKNARATLSSIRHMIRKNKYR |
NSF.Y.GLI......G.EP.A.G.G.V.VMK...GQRKPATSYV.TT..NKNA.ATLSSI.H.IRKNKYR | |
Retrocopy | NSFCYRGLIPHNM>LGMEPGAQGTGAVGVMKCTWGQRKPATSYVATT>VNKNAPATLSSI*HVIRKNKYR |
Parental | PDLRMAAIRRASAILRSQKPVMVKRRRARPTKSS |
PDL..AAI..A...LRSQKPVM.KR....PTKS. | |
Retrocopy | PDLCVAAICTAGTTLRSQKPVMGKR---LPTKST |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 25 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 106 .97 RPM |
SRP017611_liver | 0 .00 RPM | 65 .20 RPM |