RetrogeneDB ID: | retro_fcat_904 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:65305223..65305634(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000005639 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.99 % |
Parental protein coverage: | 99.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSAHLQWMVVRNCSSFLIKRNKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVV-MKRRSG |
MSA.LQW.VV.NCSSFLIKR.KQ.Y.TE.N.LKA.NS..Y.GL.HR.TVGV.PAA.GK.VVVV.MKR.SG | |
Retrocopy | MSARLQWVVVQNCSSFLIKRKKQVYITESNKLKAHNSLCYKGLMHRQTVGVKPAAKGKRVVVVVMKRKSG |
Parental | QRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRRRARPTKS |
Q.KPATSYV.TT.NKNA.A.LSSIRHMIRKNKYR.DL.MAAI.R.SA...S.KP..VKR..A.PTKS | |
Retrocopy | Q*KPATSYVWTTVNKNAWAPLSSIRHMIRKNKYRSDLHMAAIGRVSANPCSHKPMIVKRKQAHPTKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 25 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 106 .97 RPM |
SRP017611_liver | 0 .00 RPM | 65 .20 RPM |