RetrogeneDB ID: | retro_hsap_1737 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 17:26794839..26795421(+) | ||
Located in intron of: | ENSG00000258472 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000183405 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS7 | ||
Ensembl ID: | ENSG00000171863 | ||
Aliases: | RPS7, DBA8, S7 | ||
Description: | ribosomal protein S7 [Source:HGNC Symbol;Acc:10440] |
Percent Identity: | 98.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLK |
MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGG.KAIIIFVPVPQLK | |
Retrocopy | MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGQKAIIIFVPVPQLK |
Parental | SFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIV |
SFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIV | |
Retrocopy | SFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIV |
Parental | GKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL |
.KRIRVKLDGSRLIK.HLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL | |
Retrocopy | VKRIRVKLDGSRLIKAHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .68 RPM | 175 .50 RPM |
bodymap2_adrenal | 1 .31 RPM | 361 .59 RPM |
bodymap2_brain | 0 .14 RPM | 61 .53 RPM |
bodymap2_breast | 0 .41 RPM | 167 .10 RPM |
bodymap2_colon | 0 .46 RPM | 318 .25 RPM |
bodymap2_heart | 0 .17 RPM | 125 .79 RPM |
bodymap2_kidney | 0 .89 RPM | 187 .12 RPM |
bodymap2_liver | 0 .49 RPM | 209 .80 RPM |
bodymap2_lung | 0 .72 RPM | 502 .62 RPM |
bodymap2_lymph_node | 0 .82 RPM | 539 .69 RPM |
bodymap2_ovary | 1 .37 RPM | 308 .45 RPM |
bodymap2_prostate | 2 .27 RPM | 603 .61 RPM |
bodymap2_skeletal_muscle | 0 .45 RPM | 151 .58 RPM |
bodymap2_testis | 0 .70 RPM | 215 .28 RPM |
bodymap2_thyroid | 0 .47 RPM | 178 .44 RPM |
bodymap2_white_blood_cells | 1 .38 RPM | 583 .74 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_56610 | 89 libraries | 57 libraries | 460 libraries | 335 libraries | 888 libraries |
TSS #2 | TSS_56611 | 801 libraries | 749 libraries | 272 libraries | 6 libraries | 1 library |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000171863 | 14 retrocopies | |
Loxodonta africana | ENSLAFG00000015087 | 11 retrocopies | |
Myotis lucifugus | ENSMLUG00000006121 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011870 | 7 retrocopies | |
Monodelphis domestica | ENSMODG00000014495 | 2 retrocopies | |
Mus musculus | ENSMUSG00000061477 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000008507 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000028165 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025872 | 12 retrocopies | |
Rattus norvegicus | ENSRNOG00000008551 | 2 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 5 .88 RPM |
CEU_NA11843 | 6 .54 RPM |
CEU_NA11930 | 9 .55 RPM |
CEU_NA12004 | 3 .34 RPM |
CEU_NA12400 | 5 .16 RPM |
CEU_NA12751 | 3 .04 RPM |
CEU_NA12760 | 8 .44 RPM |
CEU_NA12827 | 6 .27 RPM |
CEU_NA12872 | 3 .76 RPM |
CEU_NA12873 | 5 .71 RPM |
FIN_HG00183 | 6 .53 RPM |
FIN_HG00277 | 6 .43 RPM |
FIN_HG00315 | 3 .09 RPM |
FIN_HG00321 | 3 .87 RPM |
FIN_HG00328 | 3 .39 RPM |
FIN_HG00338 | 5 .02 RPM |
FIN_HG00349 | 6 .32 RPM |
FIN_HG00375 | 4 .94 RPM |
FIN_HG00377 | 4 .26 RPM |
FIN_HG00378 | 3 .59 RPM |
GBR_HG00099 | 4 .68 RPM |
GBR_HG00111 | 3 .83 RPM |
GBR_HG00114 | 3 .84 RPM |
GBR_HG00119 | 3 .66 RPM |
GBR_HG00131 | 3 .45 RPM |
GBR_HG00133 | 3 .83 RPM |
GBR_HG00134 | 3 .69 RPM |
GBR_HG00137 | 4 .87 RPM |
GBR_HG00142 | 4 .28 RPM |
GBR_HG00143 | 4 .91 RPM |
TSI_NA20512 | 4 .92 RPM |
TSI_NA20513 | 3 .46 RPM |
TSI_NA20518 | 10 .19 RPM |
TSI_NA20532 | 5 .10 RPM |
TSI_NA20538 | 5 .44 RPM |
TSI_NA20756 | 5 .82 RPM |
TSI_NA20765 | 2 .49 RPM |
TSI_NA20771 | 5 .39 RPM |
TSI_NA20786 | 3 .14 RPM |
TSI_NA20798 | 3 .31 RPM |
YRI_NA18870 | 5 .48 RPM |
YRI_NA18907 | 3 .09 RPM |
YRI_NA18916 | 3 .20 RPM |
YRI_NA19093 | 3 .49 RPM |
YRI_NA19099 | 3 .73 RPM |
YRI_NA19114 | 3 .20 RPM |
YRI_NA19118 | 6 .30 RPM |
YRI_NA19213 | 2 .87 RPM |
YRI_NA19214 | 2 .61 RPM |
YRI_NA19223 | 4 .02 RPM |