RetrogeneDB ID: | retro_pabe_360 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:9321024..9321597(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000025872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.38 % |
Parental protein coverage: | 98.45 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRK-AIIIFVPVPQLKSF |
SS..I.KP..EKP.EF.SGISQALLELE.NSDLKAQ.RELNITAAKE.E.GGG.K.AIIIFVP.PQLKSF | |
Retrocopy | SSTRIMKPKSEKPGEFKSGISQALLELEINSDLKAQFRELNITAAKETEDGGGGK>AIIIFVPIPQLKSF |
Parental | QKIQVRLVRELEKKFS-GKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVG |
QKIQV.LVRELEKKF..GKHVVFIAQRRILPKPT.KS.TK.KQ.RPRSRTL.A.HD...EDLVFPS.IVG | |
Retrocopy | QKIQVWLVRELEKKFG<GKHVVFIAQRRILPKPT*KSCTKKKQRRPRSRTLKAMHDSVPEDLVFPSVIVG |
Parental | KRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL |
KRI.VKLDGSRLIK.HLDK.QQNNVE..VETFSGVY.KLTGKD.NFEFPEFQL | |
Retrocopy | KRIHVKLDGSRLIKAHLDKVQQNNVERNVETFSGVYMKLTGKDINFEFPEFQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 28 .03 RPM |
SRP007412_cerebellum | 0 .00 RPM | 39 .52 RPM |
SRP007412_heart | 0 .00 RPM | 36 .49 RPM |
SRP007412_kidney | 0 .00 RPM | 59 .47 RPM |
SRP007412_liver | 0 .00 RPM | 62 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_329 |