RetrogeneDB ID: | retro_pabe_3803 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:110802877..110803298(-) | ||
Located in intron of: | ENSPPYG00000020638 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000025872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 94.33 % |
Parental protein coverage: | 72.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GGRKAIIIFVPVPQLKSFQKIQVRLVRELEKK-FSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLT |
G.RKAIIIFVPVPQLKSFQKI.VRLVRE.EKK.FSGKHVVFIAQRRIL.KPTRKS.TKNKQKRPRS.TLT | |
Retrocopy | GRRKAIIIFVPVPQLKSFQKI*VRLVRESEKK>FSGKHVVFIAQRRILLKPTRKSHTKNKQKRPRSLTLT |
Parental | AVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQ |
AVHDAILEDLVFPSEIVGKRI.VKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQ | |
Retrocopy | AVHDAILEDLVFPSEIVGKRIHVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQ |
Parental | L |
L | |
Retrocopy | L |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .03 RPM |
SRP007412_cerebellum | 0 .00 RPM | 39 .52 RPM |
SRP007412_heart | 0 .09 RPM | 36 .49 RPM |
SRP007412_kidney | 0 .20 RPM | 59 .47 RPM |
SRP007412_liver | 0 .06 RPM | 62 .52 RPM |