RetrogeneDB ID: | retro_pabe_499 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:228899864..228900265(-) | ||
Located in intron of: | ENSPPYG00000001995 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000025872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.59 % |
Parental protein coverage: | 69.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVF-IAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDA |
IIIFVPV..LKSFQ.IQV.LVRELEKKF.GK.VV..IA.R.ILPKPT.K..TKNKQKRPR...L.A.H.A | |
Retrocopy | IIIFVPVLPLKSFQNIQVWLVRELEKKFTGKYVVL<IA*RKILPKPTQKRCTKNKQKRPRIHALIAAHVA |
Parental | ILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL |
ILED.VFP.E.VG.RIRVK.....L..VH.DKAQQNNVE.KV.TFSG..KKLT.K.VN.E.PEFQ. | |
Retrocopy | ILEDSVFPGETVGRRIRVKWT-QQLTRVHSDKAQQNNVERKVQTFSGIDKKLTAKAVNSESPEFQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .66 RPM | 28 .03 RPM |
SRP007412_cerebellum | 1 .22 RPM | 39 .52 RPM |
SRP007412_heart | 0 .09 RPM | 36 .49 RPM |
SRP007412_kidney | 0 .36 RPM | 59 .47 RPM |
SRP007412_liver | 0 .15 RPM | 62 .52 RPM |