RetrogeneDB ID: | retro_pabe_3659 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | X:71902899..71903221(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000025872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.27 % |
Parental protein coverage: | 55.67 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MFSSSAKIVKPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLK |
MFSS.AKIVKPNGEKPDEFESGI..ALLELEMN.DLKAQL.ELNITAAKEIEVGGGRKAIIIFV.VPQLK | |
Retrocopy | MFSSRAKIVKPNGEKPDEFESGIYRALLELEMNLDLKAQLWELNITAAKEIEVGGGRKAIIIFVSVPQLK |
Parental | SFQKIQVRLVRELEK-KF-SGKHVVFIAQRRILPKPTRKS |
SFQKIQV.LVREL.K.KF.S.KH..FIAQRRILPKPT.KS | |
Retrocopy | SFQKIQVHLVRELKK<KF<SVKHIFFIAQRRILPKPTQKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 28 .03 RPM |
SRP007412_cerebellum | 0 .00 RPM | 39 .52 RPM |
SRP007412_heart | 0 .00 RPM | 36 .49 RPM |
SRP007412_kidney | 0 .07 RPM | 59 .47 RPM |
SRP007412_liver | 0 .06 RPM | 62 .52 RPM |