RetrogeneDB ID: | retro_pabe_2982 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 6:98061428..98061993(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000025872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.86 % |
Parental protein coverage: | 97.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AKIV-KPNGEKPDEFESGISQALLELEMNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQK |
AKIV..PN.EKPDEF.SGISQALLELEM.SDL.AQLRELNITAAKE.EVG.GRKAIIIFVP.P.LKSFQK | |
Retrocopy | AKIV<EPNDEKPDEFKSGISQALLELEMISDLNAQLRELNITAAKETEVGSGRKAIIIFVPAPKLKSFQK |
Parental | IQVRLVR-ELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKR |
IQV.LV..ELEKKFSGKHVVFI.QRRILPKPTRKS.TKNKQK.PRSR.LTAV.DAILEDLVFPSEIVGKR | |
Retrocopy | IQVQLVA<ELEKKFSGKHVVFITQRRILPKPTRKSCTKNKQKHPRSRALTAVQDAILEDLVFPSEIVGKR |
Parental | IRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFPEFQL |
I..KLDG..L.KVHL.KAQQNNVEH.V..FSGVYKKLTGKDVNFEFPEFQL | |
Retrocopy | ICMKLDGGLLVKVHLYKAQQNNVEHEVKIFSGVYKKLTGKDVNFEFPEFQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .03 RPM |
SRP007412_cerebellum | 0 .00 RPM | 39 .52 RPM |
SRP007412_heart | 0 .00 RPM | 36 .49 RPM |
SRP007412_kidney | 0 .00 RPM | 59 .47 RPM |
SRP007412_liver | 0 .00 RPM | 62 .52 RPM |